Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0594 ATGGGGCTCCGTCACCGGAAGATTCTTGAAGAAATATGCTATATCTACTGCAACCTTCCCTGTTCATCTCTCGATTGCAAAGAATGTCAATTCCACTGCTCCCTGGAACCGCCGATTTACTACAACCCACCACCTCCGGCCCATGACGTCTACGGTGATCTCAATGATCCCAGCAAAATCCACCACAAGATCTCCACCTGGTTGACCGTCGTTATCGCTGTTCTGTCGGCCGCCTTCTTCGCCCTCCTCTGCTTCGCCGTCTACCGGAGATTCCTCTTGGGCTGTTTCAGGAGAAGGAGCTCGGAGACGTCGCCGGAGGAGGATCGCCGGGGAGGTTTTCTCGATGAGGAAGAGGGCCCTGTGGTGGATCATCCCATATGGTATATTCGAACCCCTGGTCTTCAACAATCGATAATTTCTGCAATCACTGTAGTTAAGTATAAGAAAGGGGAAGGGTTAATTGATGGAACAGAGTGCTCTGTTTGTTTGAGTGAGTTTGAAGAAGACGAGAATCTCAGGCTTTTGCCTAAGTGTAATCACGCTTTTCATCTTCCTTGTATTGATACTTGGCTTCGATCTCACACTAACTGCCCCATGTGCCGAGCTCCGATCGTCACCAACCCCACCACCGTCATCGCCTCGCCGGAGCCAAATGTTGCTGCTTTGACTGATTCAGAAGAACCGCAGATGGAAACAGTTGAAAATAGGAGTGAAAATAGTAGTGGGGTTATGGAGAACAGTGATAATGAATTGAGAAATAGAGATGGCGAGGAAGACGAAGGAGGAGCAAGAAGAGGAGAAATTGTTGATGAAGAGGAAGTGGGGAATTCGCAGCCACGAAGAAGATCTGTGTCTTTGGATTCTTCAGCTGTAGAGAAGATCAATCGAACTCTTGCTAGAGCTAATTACAATACTGTTGTAGGATCATCTTCATCTTCTTCCTCATCAAAGAGGGTTTCGAAAAGTGGTTCTTCTTCTTTCAGGTTGAAGTCTCTTCAGATTGTTGCTGGCACTTCAATGAAGAGATCTCGTTCCTACAATGGGAAAAATGTACATTCTTGGTACAGTCGAAGTCAGAGGAAGACAAGTGCTCCTATTAGAAGCTTTTGA 1110 0.4685 MGLRHRKILEEICYIYCNLPCSSLDCKECQFHCSLEPPIYYNPPPPAHDVYGDLNDPSKIHHKISTWLTVVIAVLSAAFFALLCFAVYRRFLLGCFRRRSSETSPEEDRRGGFLDEEEGPVVDHPIWYIRTPGLQQSIISAITVVKYKKGEGLIDGTECSVCLSEFEEDENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVTNPTTVIASPEPNVAALTDSEEPQMETVENRSENSSGVMENSDNELRNRDGEEDEGGARRGEIVDEEEVGNSQPRRRSVSLDSSAVEKINRTLARANYNTVVGSSSSSSSSKRVSKSGSSSFRLKSLQIVAGTSMKRSRSYNGKNVHSWYSRSQRKTSAPIRSF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0594 369 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Acco03g0594 369 Pfam Ring finger domain 158 201 IPR001841 -
Acco03g0594 369 SMART ring_2 159 200 IPR001841 -
Acco03g0594 369 MobiDBLite consensus disorder prediction 248 278 - -
Acco03g0594 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 208 IPR013083 -
Acco03g0594 369 MobiDBLite consensus disorder prediction 305 326 - -
Acco03g0594 369 FunFam RING-H2 finger protein ATL54 134 207 - -
Acco03g0594 369 MobiDBLite consensus disorder prediction 221 288 - -
Acco03g0594 369 SUPERFAMILY RING/U-box 152 207 - -
Acco03g0594 369 MobiDBLite consensus disorder prediction 338 369 - -
Acco03g0594 369 CDD RING-H2_EL5-like 158 201 - -
Acco03g0594 369 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 60 221 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0594 Acco-ChrAcco03 8514495 8515604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0594 64 252 C3H Transcription Factor Family AT1G72220 46.040 1.80e-44 156