Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0473 ATGGGCTTAACGAGAAGGCAATGGAGAATTGTAGATTGGAAGACAATCATTGATGGGTCAAAGTCCAGTTTAGTTATATTGGTAGATACAAGATGCTCTCAAGTGTCTAGACTTAGACATCTTCTTCGTCTGGGATTCGATAACAACAAATTAATTCACAGTGTCAGTAGCTCAGGAGGAATTGTGGTGATCTGGAAGAGTAATGCCATCTCTGTATCGGCTCTAGAAGAAGACCAGCAATTCTTTCATTTACGTTGCTCTATAACAGACACTTCAAGACTACTGACTGCTTGTAGAGATATTGATCCTTTACATGATGAGTGTTGTGACCAAGTTTGCCAAAATGCCATAAATTATGCTGCTGAAAAAATTGCCCTAAACGATATGACAAATATAGATGGGGACAAAAGCTTGCCTGAGCAGCCCGGGGCGGGCCGACGCAATTGGCACGGCACACGTAGAATAGGCACAAGTGATATATATACATACAGTAAGCAGAGCTTGCGCCGCCTGCCGCCTTCATTCTGTTCTCGTCCCTCACACTCTCTGCGTAGCTTTTCCTCCCGGCGAATTAACCCGGGACGTAATCGGAGAATAATTCTCTTGCCTCCGTTTAAAATGGCTGAAGTGGAAGAGTTTCGCTGCTTTGTTGGTGGCCTTTCATGGTCAACATCTGATAGAAAGTTAAAAGATTCATTTGAGAAGTTTGGAAAGCTTCTTGAAGCCAGGGTGGCTGTTGACAAGGTCTCAGGCCGCTCTCGTGGTTTTGGATTTGTAACATTTGATGATCATAAAGCTATGGAAGATGCCATTGAGGCTATGAATGGGATGGATTTAGATGGTCGAACTATCACCGTTGATAAGGCAAAACCTCAACAGGGATCAGCTAGAGATGATGGTGATAGGTACCATGAACATGGTCGGGATCGCAGTCATAAACGAGACTATGGAGGTGGTCGAGGTTCTGGTGGTGGTGAGTGCTTTAAGTGTGGCAAACCTGGTCATTTTGCTAGAGAGTGTCCCAGTGAAGAGGGAAGAGGTGGAAGGTATGGTGGCAGAGAAAGTAGATATGGTAACAGTGGTGGTGGGGGTCGCTATGGTCCTGATAGGAATTCCGATCGCTATTCAGGTGGGCGAAACAGGGATGCTGATAAGTATGGGGATTATGGAAATGATCGATATAATCGTAGTGATCGTGCTGGACCTTATGAGAGGAGAGGAACAGGAGGCCCTCGTTCCGGATAG 1245 0.4538 MGLTRRQWRIVDWKTIIDGSKSSLVILVDTRCSQVSRLRHLLRLGFDNNKLIHSVSSSGGIVVIWKSNAISVSALEEDQQFFHLRCSITDTSRLLTACRDIDPLHDECCDQVCQNAINYAAEKIALNDMTNIDGDKSLPEQPGAGRRNWHGTRRIGTSDIYTYSKQSLRRLPPSFCSRPSHSLRSFSSRRINPGRNRRIILLPPFKMAEVEEFRCFVGGLSWSTSDRKLKDSFEKFGKLLEARVAVDKVSGRSRGFGFVTFDDHKAMEDAIEAMNGMDLDGRTITVDKAKPQQGSARDDGDRYHEHGRDRSHKRDYGGGRGSGGGECFKCGKPGHFARECPSEEGRGGRYGGRESRYGNSGGGGRYGPDRNSDRYSGGRNRDADKYGDYGNDRYNRSDRAGPYERRGTGGPRSG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0473 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 285 IPR000504 GO:0003723
Acco03g0473 414 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 207 408 - -
Acco03g0473 414 SUPERFAMILY Retrovirus zinc finger-like domains 319 345 IPR036875 GO:0003676|GO:0008270
Acco03g0473 414 SUPERFAMILY RNA-binding domain, RBD 206 322 IPR035979 GO:0003676
Acco03g0473 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Acco03g0473 414 ProSiteProfiles Zinc finger CCHC-type profile. 327 342 IPR001878 GO:0003676|GO:0008270
Acco03g0473 414 SMART c2hcfinal6 326 342 IPR001878 GO:0003676|GO:0008270
Acco03g0473 414 Gene3D - 205 322 IPR012677 -
Acco03g0473 414 Pfam Zinc knuckle 326 342 IPR001878 GO:0003676|GO:0008270
Acco03g0473 414 MobiDBLite consensus disorder prediction 372 405 - -
Acco03g0473 414 MobiDBLite consensus disorder prediction 338 414 - -
Acco03g0473 414 SMART rrm1_1 214 287 IPR000504 GO:0003723
Acco03g0473 414 CDD RRM2_NsCP33_like 214 289 - -
Acco03g0473 414 Gene3D - 323 413 - -
Acco03g0473 414 MobiDBLite consensus disorder prediction 286 324 - -
Acco03g0473 414 MobiDBLite consensus disorder prediction 292 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0473 Acco-ChrAcco03 6220633 6229742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0473 215 299 Eukaryotic Initiation Factors Gene Family AT1G22760 35.294 8.45e-11 62.0