LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g0407	ATGAAGATCTCCGTGGTTCTTCTCTTTCTCTTCTTCTCCATATTTCTTACTCTCAGCTCTGCAGTTCCTTCGTCTTCTTCACCCTCTGTTAAGAATTCCACCTGCCCTGTGGATCTGGACTATGTGCGGAGAATTCCATGGAACTCCTCCGTATGCCAAAACTTTCATCCTTTGGATTCCGTAGACGACACTCGAGGAACCCATTGTTGCGGAACTTTACTATCCCTAATTGGCATAGGGTTTGCTCGGCATCTCAAAGAAACCTCCATGTTTAACCTCCAAGATCTTCGAACCTCCAATTCTTGCCTCCGTGACTTCCAATCCAAGCTCTCTTCCCTCTCTCTCCCCGATTACCTAACCTCGGTTTGTTTCGACCCGCTTCAATTTGTGGTTAGTCATGACGTCTGCGCGAAAATTCAAAGGATTCCTGATTGGATCGCGAAGCTCGGACAAACGACGCCGCTTAATCAGGCATGCAAACCGGACCTGACTGATCTTACCCTATGTGGTGCGTGCCTGGCGGCGGGGTTTCAGGTTCAGCAGGAACTCACAGACATTGATGGTAACCCTTCCCACGGTACAAATTGTTTTCGCTTTGTTATTTTGTATGCCGCTGGTATCGTGAATGAGCTTGGTCCAGAGAGTAATGGTGCTGTGACATGCATTTTTGGCATGTCGGTTTATCCAACTGTGGATTCTAGTGGAAATGGTCGCCATCAAGCTCTTGTGTTTGGGTTAACCGGAGCTGCGGTTGGGTTGTTGGCCATGTTCGTTTTGTTGGGTCTGTATCTATGGTATGATAGGAGGTGGAGGAGGGGAAAACATGAGAGTTTTGGGTTTGATGTTGATCCTGAAGAGCAGGGATCCAGGCGTAGAATGAGGCCGAATACTGGATCAATCTGGTTTAAGATTGAGGAGCTTGAGAAGGCTACTAATGGTTTTTCATCTAAAAATTTCATAGGAAGAGGTGGATTTGGGATGGTTTACAAGGGAACTTTGGCTGATGGATCTGTGGTCGCAGTTAAAAGGATTTTGGAATCTGATTATCAAGGGGATGCTGAGTTCTGCAATGAAGTAGAGATTATTAGTAATCTGAAGCACCGTAATCTGGTACCACTTAGAGGGTGTTGTGTGGTGGACGAGGGTGAGAATTATGAGGAAAGGGGTCAAAGATATCTTGTTTATGACTACATGCCAAATGGTAATCTCGAAGACCATCTTTTCTCATCATCAGTGGGCAATCAAAATGAGAAGAGATCATTGACTTGGCCACAGAGAAAAAGCATAATCTTGGATGTAGCAAATGGATTGGCTTACTTGCATTATGGAGTTAAGCCTTCGATTTATCACAGAGACATCAAGGCCACCAATATACTACTCGGCGCAGATATGAGGGCGAGAGTGGCAGATTTTGGGCTTGCTAAGCAGAGCAGGGAAGGTCAGTCTCATCTCACTACTAGAGTTGCTGGAACTCATGGATATCTAGCCCCAGAGTATGCGCTATACGGTCAGCTTACTGAGAAAAGTGATGTCTATAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGACTTGTCTTCATCAGGATCTCCAAGGGCATTCTTGATCACAGATTGGGCGTGGTCCTTGGTTAAATCTGGGAACATAGACGAGGCTTTAGACGCTTCCCTTTTAAAAGATGGCGATTGTCCTAGTTCAAATCCTAAGAGCATAATGGAAAGGTTTTTGCTTGTGGGGATTCTGTGTTCTCACGTGATGGTTGCTTTGAGGCCAACGATTTCTGAAGCTTTGAAGATGTTGGAAGGTGATGTCGAAGTCCCAGAAATCCCAGACCGGCCTTTGCCTCTTGGGCATCCTTCATTTTACAATGATGGTAACAATACTTTTAGCATATCTCCAGTATTAAGCGGCCCAAAATTGCATAGTGGAGACATGCTCAGGTAA	1959	0.4533	MKISVVLLFLFFSIFLTLSSAVPSSSSPSVKNSTCPVDLDYVRRIPWNSSVCQNFHPLDSVDDTRGTHCCGTLLSLIGIGFARHLKETSMFNLQDLRTSNSCLRDFQSKLSSLSLPDYLTSVCFDPLQFVVSHDVCAKIQRIPDWIAKLGQTTPLNQACKPDLTDLTLCGACLAAGFQVQQELTDIDGNPSHGTNCFRFVILYAAGIVNELGPESNGAVTCIFGMSVYPTVDSSGNGRHQALVFGLTGAAVGLLAMFVLLGLYLWYDRRWRRGKHESFGFDVDPEEQGSRRRMRPNTGSIWFKIEELEKATNGFSSKNFIGRGGFGMVYKGTLADGSVVAVKRILESDYQGDAEFCNEVEIISNLKHRNLVPLRGCCVVDEGENYEERGQRYLVYDYMPNGNLEDHLFSSSVGNQNEKRSLTWPQRKSIILDVANGLAYLHYGVKPSIYHRDIKATNILLGADMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGNIDEALDASLLKDGDCPSSNPKSIMERFLLVGILCSHVMVALRPTISEALKMLEGDVEVPEIPDRPLPLGHPSFYNDGNNTFSISPVLSGPKLHSGDMLR	652

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g0407	652	Gene3D	Transferase(Phosphotransferase) domain 1	398	613	-	-
	Acco03g0407	652	SMART	serkin_6	314	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0407	652	CDD	STKc_IRAK	320	607	-	-
	Acco03g0407	652	PANTHER	OS01G0750732 PROTEIN	56	613	-	-
	Acco03g0407	652	Pfam	SPARK	31	197	IPR043891	-
	Acco03g0407	652	SUPERFAMILY	Protein kinase-like (PK-like)	292	606	IPR011009	-
	Acco03g0407	652	Gene3D	Phosphorylase Kinase; domain 1	283	397	-	-
	Acco03g0407	652	FunFam	probable LRR receptor-like serine/threonine-protein kinase RKF3	398	613	-	-
	Acco03g0407	652	ProSitePatterns	Protein kinases ATP-binding region signature.	320	342	IPR017441	GO:0005524
	Acco03g0407	652	ProSiteProfiles	Protein kinase domain profile.	314	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0407	652	Pfam	Protein kinase domain	316	530	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0407	652	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	448	460	IPR008271	GO:0004672\|GO:0006468
	Acco03g0407	652	FunFam	probable receptor-like protein kinase At1g11050	278	397	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g0407	Acco-ChrAcco03	5066604	5068562	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g0407	25	652	Receptor kinase-like Gene Family	AT1G11050	64.331	0.0	788

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RKF3	Acco03g0407		Pkinase	3.9e-42	CL0016