Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0400 ATGGTTAAGGATACGGCAATGGAGCTTCCTCCTCGCGATGATTGCTGTCCTGTTTGCCATGGCGATTTCAGCCTCCCATGCCGTACCTCCTGCTCCCACTGGTTCTGCGGAGAGTGCATATTGCGTGTATGGCTACATGGAGATGCATCAAGGCAATGCAAATGCCCAATGTGTTGTCGTCATTTTTCCAGTCTGGCACCCTTTCAAGCAGCATTTGACTGTAGTCAGAACCCAGAATCAACCAAGATCATGGACAATGTGAGAAGGTACAACAGGTTGCACATTGGGGGCATGCAAGGTCTCATGCAGAAACTTTTTGATCTCCCATTTCTTGTTCGGATGGCTCTCCAAGATATGATGGATCCTGATAAAACAAGTTCTTACTTGACTAGAGTTCGCCTCTTTGCATGGTTGGATCTTAGGGCAATGGCAGGTGAAGTTAGGGAGTTGAAAGAGTCCGTGGCGAGCTTGGCAAGGCGAGTGGACGATCTTTCTGGGTTGTCAAAACAGGTAGAGGGACTTGCAGAAGGTATGAACGTCATGAGAGAGATGCTGTTAAGAATGGAACGAAGAACAAGAAAGAAGAGCAAGGATAAGGGAGAGGCAGAAGGATCTCAATCAGAATCAGAAACAGAAAGCAACGGAGAGGCAGAGAAGGAGGCAGTAAAATTTCGAAAGCAAAGGGGAGCTCGCCGGGAACAAGGGGACCCAACTGTATCTCGCACCCAAGCTTCGTTACAGTCCATTATAAAGACGGTTAAGAAGAAGGGGGAGGCCTTTTTGATAGAGCGCATATGCCTAGAGAAGGGGACCAGCGAAAATCCAGTATTTACACCGGAAGTTCAGAACCTGTTAAATAAATTTGATGCTGTATGTCGATTGACTGAAGCCTTACCTCCCAAACGGGCTCGAGACCATGCGATCATAATCAGGCCAGGGGAGCAACCACCCAATATCCGACTCTACAGGTTCCTGCATGCACAGAAGAAAGAAATTGAGGAGCTCATTAGGGATATGTTGCAAGCTGGGATCATACAGCCAAGCATTAGTCCCTACTCTAGCCCTGTATTATTAGTGAAGAAGAAGGACGGGAGCTGGCAATTCTGTGTAGATTATCGAGCAGTGAATAAGATTATTGTTCCGAACAAGTTCCCCATTCCAGCCATTGATGAATTGTTGGATGAATTGAAAGGAGCAACAATTTTCTCCAAGCTGGACCTGAAATCCGGGTACCACCAGATTAGAATCAAGGAGGGAGATGAGCACAAGACAGCTTTCCGCACCCATGAAGGACACTACGAATTCAAGAACAACCACCTAGTCATCAACTTGAAGAAGTGTAGCTTCATGCAACCTAGAGTGGAATACTTAGGCCACATTATATCAGTACAAGGGGTACAGGCTGATCCCTCAAAGGTGGAGAGTATGACATCATGGCCCCAACCCAAGAATGTGAGATCACTCCGGGGATTTTTGGGGCTGACCGGGTACTACCGAAGATTTGTTAAGGGGTATGGAAAAATAGCCAGCCCTTTAACCGAACTCCTCAAGAAGGACGCTTTTCATTGGACTCTAGAATCCACCAAAGCTTTCAAAGCTCTCAAGAAAGCCATGACGACTCTTCCGGTGCTTGCTATGCCTGATTTTTCACTTCCGTTTGAATTAGAAACTGATGCTTCTGGGACTGGAATAGGCGCGGTACTGATGCAGTAG 1713 0.4688 MVKDTAMELPPRDDCCPVCHGDFSLPCRTSCSHWFCGECILRVWLHGDASRQCKCPMCCRHFSSLAPFQAAFDCSQNPESTKIMDNVRRYNRLHIGGMQGLMQKLFDLPFLVRMALQDMMDPDKTSSYLTRVRLFAWLDLRAMAGEVRELKESVASLARRVDDLSGLSKQVEGLAEGMNVMREMLLRMERRTRKKSKDKGEAEGSQSESETESNGEAEKEAVKFRKQRGARREQGDPTVSRTQASLQSIIKTVKKKGEAFLIERICLEKGTSENPVFTPEVQNLLNKFDAVCRLTEALPPKRARDHAIIIRPGEQPPNIRLYRFLHAQKKEIEELIRDMLQAGIIQPSISPYSSPVLLVKKKDGSWQFCVDYRAVNKIIVPNKFPIPAIDELLDELKGATIFSKLDLKSGYHQIRIKEGDEHKTAFRTHEGHYEFKNNHLVINLKKCSFMQPRVEYLGHIISVQGVQADPSKVESMTSWPQPKNVRSLRGFLGLTGYYRRFVKGYGKIASPLTELLKKDAFHWTLESTKAFKALKKAMTTLPVLAMPDFSLPFELETDASGTGIGAVLMQ 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0400 570 SUPERFAMILY RING/U-box 12 66 - -
Acco03g0400 570 Gene3D - 433 466 IPR043128 -
Acco03g0400 570 CDD RT_LTR 343 461 - -
Acco03g0400 570 MobiDBLite consensus disorder prediction 190 243 - -
Acco03g0400 570 Coils Coil 140 167 - -
Acco03g0400 570 Gene3D - 471 556 IPR043128 -
Acco03g0400 570 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 299 432 - -
Acco03g0400 570 SUPERFAMILY DNA/RNA polymerases 290 570 IPR043502 -
Acco03g0400 570 Pfam RNase H-like domain found in reverse transcriptase 523 570 IPR041577 -
Acco03g0400 570 FunFam Transposon Tf2-6 polyprotein-like Protein 471 559 - -
Acco03g0400 570 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 359 429 IPR000477 -
Acco03g0400 570 SMART ring_2 16 58 IPR001841 -
Acco03g0400 570 ProSiteProfiles Zinc finger RING-type profile. 16 58 IPR001841 -
Acco03g0400 570 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Acco03g0400 570 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 298 436 - -
Acco03g0400 570 MobiDBLite consensus disorder prediction 190 235 - -
Acco03g0400 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 94 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0400 Acco-ChrAcco03 4973240 4978171 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0400 8 136 C3H Transcription Factor Family AT4G33940 48.837 3.04e-43 151