Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0399 ATGGTTCGCAGTCAAACCAATTCAGCCAGTGATGGGCTTCCTAAAGTCAATTGGTTGGATCATGCTAGTGCACATGAGAACTTTTCGCGTCAAAACAGGTTTTTGACTTCCAACTTCCTATTCTCCTTGCCGACTCAAAAGCCATGCTCTGAAGAAGCCTTGTGTGGGAGATTTGTACTCTATCAAAATCAAAATATTGAAAGTTTGCAAAGAACACAAGTTGAGAAGGCTTGGCGTGCTATTTCAAGTCTACAGAATTCTTGCAGGAACTATGCCAAACCGGGAAAAACTGTACAAATCAGTCCTTCAGTTCTTGCAGACAGAAGAACAACTACCTCGCAGAGAAGTTCTGAGAATGATAGATGTTTTCAGTTTAATAATTTTAACGTCTTAAGTGAAAACAATGTGAAATCTAATCAATATTTTCCATCAAGTAATCCTATAGCTGAAGGAGGGGATAGTTTGAGGCACCTTGATGAAGCCACTACTCCAACAGTCAATAATAATTGTTCTCGAGTTTTGGATGGTCCAGTGAACCACCGTACAAAGTATACTGCTGAAATTAACAGGTCAACAAATTGTATGGCTGACAACATTGATGAGGATGATGATGACATACTTGGGAATATTGATGTTGACCAAATAGTGGAAAACTACCAGTCGACTTGCACTCCTAAACCATCAATAGCCAAGTTTCCTCCTTTTTCTCCTACTGTTGATGCAAATAGTGTTGCTAGACAAGAGGAACATGGTTTGCCACTGGAGTTGTGCTCAGATTGCATTCATGGTTATAAGGTAGCGCTTTGCCCTCAGGCCACAAATCATCTGCAGGAATGGAAGGACAATCTGATTGCTATCTCTAATGAACTGCTTGACAATGTTGACGGCCTCAATTCCTCACAGATAGCTAAGCTTCGTGAAGACAGGTCACAGTTAAATAAGCAAATTCAGCTGCTTGAAAGATATATTCATTCCTGTAAGCTTGTTGAGGAAAGACAAAACTCACATTTTTCAGCGTCCACAGCACCTCCAACTTCTTTTCAGTTTGAGACACTAAATCGAACTGAACTCAGGAGTGGATCAGTGAGATATGATAACCAGGCTTATATGAATAATGAGCCATGTGGAGCATCATTCCAGTCATTTTCATGCTCTTCTGTTGATAAGTATGGCATGTCATCAGGGCCAATGGAGAGAGAAACATTTATTCCAAAGATTATTGATGTTAAATACATTGAAGGTTCTGGAGACAAACGCTGGAGTGACCAAAATTTTCCTTGGACGAAAAAGCTCGAGGCCAACAATAAAAAGGTTTTTGGAAATCATTCATTCCGCCCCAATCAGAGAGAGGTTATTAATGCGACAATGAGTGGATATGATGTTTTTGTTCTAATGCCTACAGGTGGAGGGAAGAGTCTGACCTACCAGCTCCCTGCTCTTATTTGTCCCGGCATAACTTTAGTAATCTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCATCTGTTGCAGGCAAATATCCCTGCTGCATACTTAAGTTCCAATATGGATTGGTCCGAACAGCAGGAGATCTTGAGAGAAATTAATTCTGATTGTTGTAAATACATGTTTTTATATGTAACACCTGAAAAAGTTGCCAGAAGTGATGTTCTTTTGAGGCAATTGGAAAGTTTGCATGTTCGTGAGTTGCTTTCTAGGATTGTAATTGATGAAGCTCACTGTGTGAGCCAATGGGGGCATGATTTTAGACCAGATTATCAGGGCCTTGGTATATTGAAACAAAAATTTCCAAATACTCCTGTTCTAGCTTTGACGGCTACAGCAACAGCCAGCGTAAAAGAAGATGTCGTTCAAGCTCTTGGTCTTGTCAACTGCATTGTTTTCCGGCAAAGTTTTAATCGCCCAAATTTATGGTACTCTGTTGTCCCCAAGACAAGGAAGTGTTTGGAGGACATTGATAAATTTATCAGGGAAAATCACTATGACGAATGTGGCATTATATATTGTCTTTCACGGACTGACTGTGAAAAAGTTGCTGAAAAATTACAGGAATGTGGACATAAAACTGCATTTTATCATGGTAGCATGGATCCTGCTCAACGAACCTTTGTTCAAAATCATTGGAGCAAAGATGAAATAAATATAATGTGTGCTACTGTGGCATTTGGAATGGGAATCAACAAACCTGATGTTCGCTTTGTAATTCATCACTCTCTCCCAAAATCTATTGAAGGCTACCACCAGGAGTGTGGACGAGCTGGTAGAGATGGTCAACGTTCATCCTGCATATTATATTATAGCTATAGTGACTATATACGAGTTAAGCACATGATAACTCAAGGAGCAATGGAGCAAAGTCCAATGACATCTGGATACAATCGATCAAATTTGACTAATTCAGGGAGGGTGCTAGAAACTAACACTGGAAACCTTCAGCGGATGGTCAGCTATTGTGAAAATGATGCTGATTGTCGGCGACTTCTGCAGCTTGCTCATTTTGGGGAGAGGTTTGATTCTGCAAACTGTAAGAAAACATGTGATAACTGTTTGAAGGTCAAGAGTTTTATTGAGAAGGATGCCACAGAGATCGCAAAGCAATTGGTTGAGCTAGTTAAGGAAACGAGGCAGAATTTTTCATCATCTCATATCTTGGAAGTGTACCGGGGTTCCTTAAACCAGTTTGTCAAAAAACACCGGCATGAAACAGTACGGCTTCATGGTGCTGGGAAGCATCTAGCTAAGGGAGAGGCTTCCCGTGTATTGCATCATCTTGTTGTTGAAGATTTTCTTGTGGAGGATGTAAAGAAAAGTGATATTTATGGATCAGTCTCATCAATATTAAAGGTCAACGAGTCCAAGGCCCGGAACCTGTTTGGTGGCCAGAAAATTATATTAAGAGTTCCTTCCTCGGATAAAGCTTCGAAGTTGGGAACTCCAGGCATAACACCAGCTAAAGGCTCTTTGACATCTGGGAAGGTGAATTTTCCACAAAATGACACTCTTGCCGCGCCTCAAACTGAAGTGGACTTGAATCTTTCAGCTAAGTTGTTCAGTGCTCTGCGGTTGCTGCGGACTGCTATTGTCAAAGAAGCTGGAGAGGGTGTAATGGCCTACCATATTTTCGGAAATGCTACGCTGCAGCAGATAAGCAAGAGATTACCAAGAACAAAAGAAGAGCTCCTTGAGATCAATGGCATCAGCAAGGCCAAGGTGAGCAAGTATGGAGATCGGTTACTTGAAACCATTGAAAAGACGAGAAGGGAATATAACAAGTCGGACAAAAGCAGCAGCTGGAGCAACGAGAGCAATGACTCTGCTAAAAGGAGACGAGGCTCAAAAGGAAAAGAAGACGGCGATGAAGATGACGAATGCACCAGAAGTAATGGTCGTTCAAAGAAAAGGACAGTAAAGAGAAAAAATGTAAAAGCTGTGGTTTATGATTCTGGCGCAGAAGAAGATTATTTTAAAGATTGCCTAGATGAAGATCTTGATTTTGACAATATAGAGAATACTGCATTGGATATAAATCGTAGGAATAGTGAAGGAAGAGTTCTTCCTGAATGGACATCTTGA 3576 0.4074 MVRSQTNSASDGLPKVNWLDHASAHENFSRQNRFLTSNFLFSLPTQKPCSEEALCGRFVLYQNQNIESLQRTQVEKAWRAISSLQNSCRNYAKPGKTVQISPSVLADRRTTTSQRSSENDRCFQFNNFNVLSENNVKSNQYFPSSNPIAEGGDSLRHLDEATTPTVNNNCSRVLDGPVNHRTKYTAEINRSTNCMADNIDEDDDDILGNIDVDQIVENYQSTCTPKPSIAKFPPFSPTVDANSVARQEEHGLPLELCSDCIHGYKVALCPQATNHLQEWKDNLIAISNELLDNVDGLNSSQIAKLREDRSQLNKQIQLLERYIHSCKLVEERQNSHFSASTAPPTSFQFETLNRTELRSGSVRYDNQAYMNNEPCGASFQSFSCSSVDKYGMSSGPMERETFIPKIIDVKYIEGSGDKRWSDQNFPWTKKLEANNKKVFGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSSNMDWSEQQEILREINSDCCKYMFLYVTPEKVARSDVLLRQLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNRPNLWYSVVPKTRKCLEDIDKFIRENHYDECGIIYCLSRTDCEKVAEKLQECGHKTAFYHGSMDPAQRTFVQNHWSKDEINIMCATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYSYSDYIRVKHMITQGAMEQSPMTSGYNRSNLTNSGRVLETNTGNLQRMVSYCENDADCRRLLQLAHFGERFDSANCKKTCDNCLKVKSFIEKDATEIAKQLVELVKETRQNFSSSHILEVYRGSLNQFVKKHRHETVRLHGAGKHLAKGEASRVLHHLVVEDFLVEDVKKSDIYGSVSSILKVNESKARNLFGGQKIILRVPSSDKASKLGTPGITPAKGSLTSGKVNFPQNDTLAAPQTEVDLNLSAKLFSALRLLRTAIVKEAGEGVMAYHIFGNATLQQISKRLPRTKEELLEINGISKAKVSKYGDRLLETIEKTRREYNKSDKSSSWSNESNDSAKRRRGSKGKEDGDEDDECTRSNGRSKKRTVKRKNVKAVVYDSGAEEDYFKDCLDEDLDFDNIENTALDINRRNSEGRVLPEWTS 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0399 1191 NCBIfam RecQ family ATP-dependent DNA helicase 436 911 IPR004589 GO:0004386|GO:0006310
Acco03g0399 1191 MobiDBLite consensus disorder prediction 1104 1131 - -
Acco03g0399 1191 SMART ultradead3 440 643 IPR014001 -
Acco03g0399 1191 SUPERFAMILY HRDC-like 1014 1086 IPR010997 GO:0000166|GO:0044237
Acco03g0399 1191 MobiDBLite consensus disorder prediction 1090 1142 - -
Acco03g0399 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 633 901 IPR027417 -
Acco03g0399 1191 CDD DEXHc_RecQ 432 634 - -
Acco03g0399 1191 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 452 627 IPR014001 -
Acco03g0399 1191 Gene3D - 409 634 IPR027417 -
Acco03g0399 1191 Pfam RecQ zinc-binding 769 851 IPR032284 -
Acco03g0399 1191 SMART helicmild6 677 758 IPR001650 -
Acco03g0399 1191 Pfam HRDC domain 1015 1083 IPR002121 GO:0003676
Acco03g0399 1191 ProSiteProfiles HRDC domain profile. 1011 1093 IPR002121 GO:0003676
Acco03g0399 1191 FunFam ATP-dependent DNA helicase RecQ 417 634 - -
Acco03g0399 1191 Gene3D HRDC domain 1010 1098 IPR044876 -
Acco03g0399 1191 Gene3D - 858 967 IPR036388 -
Acco03g0399 1191 Pfam DEAD/DEAH box helicase 446 614 IPR011545 GO:0003676|GO:0005524
Acco03g0399 1191 FunFam Bloom syndrome, RecQ helicase 635 855 - -
Acco03g0399 1191 Coils Coil 302 322 - -
Acco03g0399 1191 Pfam Helicase conserved C-terminal domain 651 757 IPR001650 -
Acco03g0399 1191 SMART hrdc7 1011 1093 IPR002121 GO:0003676
Acco03g0399 1191 SMART RQC_2 860 970 IPR018982 GO:0006260|GO:0006281|GO:0043138
Acco03g0399 1191 CDD SF2_C_RecQ 635 767 - -
Acco03g0399 1191 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 566 575 IPR002464 -
Acco03g0399 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 776 IPR027417 -
Acco03g0399 1191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 652 799 IPR001650 -
Acco03g0399 1191 PANTHER DNA HELICASE RECQ FAMILY MEMBER 416 1101 - -
Acco03g0399 1191 Pfam RQC domain 857 973 IPR018982 GO:0006260|GO:0006281|GO:0043138
Acco03g0399 1191 Gene3D - 635 854 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0399 Acco-ChrAcco03 4962120 4970819 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0399 666 789 Eukaryotic Initiation Factors Gene Family AT3G19760 25.197 1.20e-07 53.5