Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0378 ATGAATATTCCGGTGGCTTTCAAGCAAGAGGTGGTCTACAAGGAGTGCCTGCATAACCATGCAGCCTCCCTCGGCAAAGTCGCCAGAGATGGTTGCTATGAATTCCTGCAGCCCAACATCGACGGTGGCTCGCCGGAGGCTGCCTTGCTTTGTTCAGTTTGCAACTGCCACCGGAACTTTCACCAGAAACAAGTTGTCTATACTCCAATCATGACAGTTGACACCGAAACCTCCCCGCCGCAAACCCAACAACAGCCTGACTTTCCGGCTGAAGCTACAATGGCTGCTGCTGCTGAGGAGAATGCCGACATTGCCATGACGGTGGTGGTGGCGCCACCGCCACAGCAGGGGAGGAAGAGGAAGACGAGGACTAAGTTCACGGATGAGCAAGTGAGTCGACTGGAAAGTTTTGCTCAAAGGTTGAGGTGGAGGTTGAAGAGCGCCGGCAAGGAAGAGATCCTTAATTTTTGCTCGGAAGTCGGAATCAGTCGTCCGAAGTTTGTTGTGTGGCTCAACAACAACCGGCGAAGACAGAATGCAAATCATCATCAAGCTGATGATGAAAATTGA 570 0.5193 MNIPVAFKQEVVYKECLHNHAASLGKVARDGCYEFLQPNIDGGSPEAALLCSVCNCHRNFHQKQVVYTPIMTVDTETSPPQTQQQPDFPAEATMAAAAEENADIAMTVVVAPPPQQGRKRKTRTKFTDEQVSRLESFAQRLRWRLKSAGKEEILNFCSEVGISRPKFVVWLNNNRRRQNANHHQADDEN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0378 189 SUPERFAMILY Homeodomain-like 114 178 IPR009057 -
Acco03g0378 189 Pfam ZF-HD protein dimerisation region 11 65 IPR006456 -
Acco03g0378 189 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 176 - -
Acco03g0378 189 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 13 64 IPR006456 -
Acco03g0378 189 Gene3D - 111 181 - -
Acco03g0378 189 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 13 64 IPR006456 -
Acco03g0378 189 ProSiteProfiles 'Homeobox' domain profile. 117 181 IPR001356 GO:0003677
Acco03g0378 189 NCBIfam homeobox domain, ZF-HD class 119 175 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0378 Acco-ChrAcco03 4694909 4695478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0378 3 175 ZF-HD Transcription Factor Family AT1G69600 32.812 1.99e-30 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco03g0378 ZF-HD_dimer 4.3e-21 No_clan