Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0346 ATGGCGTCTGCAAGCCTTGGCAATGGTGGGGTCGGCAGTTCCAGCTCTGCTAATGGCTTCAGAGAGTCATCTAGTTCAGTGGATTGGCTTGGGAGAGAGATGCTTGAGATGAGGTTGGGGGACAAGGGGGACCATGATGAGGATAGAGATAGTGAGCCTGACATAATCGATGGTGTGGGTGTTGAAACAGGACACGTGATTAGAACTAGCATTGGTGGTCGAAATGGCCAGTCTAAACAGAATGTCAGTTATATTGCGGAGCATGTGATTGGAACAGGCTCTTTTGGTGTTGTTTCCCAAGCAAAATGCAGAGAAACTGGAGAGATTGTGGCCATTAAAAAGGTTCTTCAGGACAAGCGCTACAAAAATAGGGAGTTGCAGATTATGCAAATGCTGGATCATCCAAATGTTGTCGCCCTTAAGCATTATTTCTTTTCAACGACTGACAAAGAAGAGCTTTACTTGAATCTTGTGCTTGAATATGTTCCTGAAACTGTTAATCGTATTGCAAGGAATTATAACAAAATCAACCAGCGAATGCCTTTAATATATGTTAAGCTTTACACCTACCAGATTTGCAGGGCTCTTGCATATATACATAATTGCATCGGAATCTGCCATCGTGACATCAAACCACAGAATCTTCTTGTGAATCCACATACACATCAGCTGAAACTCTGTGATTTTGGAAGTGCAAAAGTGTTGGTGAAAGGAGAGCCAAATGTTTCTTACATCTGTTCAAGATATTATCGTGCTCCAGAACTTATTTTTGGTGCCACTGAGTATACAACTGCTATAGATATATGGTCAACTGGATGTGTAATGGCTGAATTACTTCTTGGACAGCCTTTGTTTCCTGGAGAAAGTGGAGTTGACCAACTTGTTGAAATCATTAAGGTTTTGGGAACTCCAACCAGGGAAGAGATAAAATGCATGAACCCAAATTATACTGAATTTAAGTTTCCGCAGATTAAACCTCATCCATGGCACAAGGTCTTTCAGAAGCGGTTACCCCCTGAAGCAGTGGACCTTGTGTGTAGGTTCTTTCAGTATTCTCCCAATTTGCGATGCACTGCTTTGGAAGCTTGTATTCACCCTTTCTTTGATGAATTGAGGGATCCAAATACCCGCCTTCCTAACGGCCGCCCACTTCCTCCTCTTTTTAATTTTAAAGCTACAGAGCTCTCCGGTATACCGCAAGACGTCATCAATAGGCTTATTCCAGAACATGCTCGTAAGCAGAACTTGTTTATGGCTTTGCACACCTAG 1269 0.4263 MASASLGNGGVGSSSSANGFRESSSSVDWLGREMLEMRLGDKGDHDEDRDSEPDIIDGVGVETGHVIRTSIGGRNGQSKQNVSYIAEHVIGTGSFGVVSQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNVVALKHYFFSTTDKEELYLNLVLEYVPETVNRIARNYNKINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKATELSGIPQDVINRLIPEHARKQNLFMALHT 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0346 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Acco03g0346 422 SUPERFAMILY Protein kinase-like (PK-like) 83 396 IPR011009 -
Acco03g0346 422 ProSitePatterns Protein kinases ATP-binding region signature. 90 114 IPR017441 GO:0005524
Acco03g0346 422 MobiDBLite consensus disorder prediction 1 23 - -
Acco03g0346 422 Gene3D Phosphorylase Kinase; domain 1 69 163 - -
Acco03g0346 422 MobiDBLite consensus disorder prediction 40 59 - -
Acco03g0346 422 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 53 414 - -
Acco03g0346 422 ProSiteProfiles Protein kinase domain profile. 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0346 422 Pfam Protein kinase domain 86 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0346 422 SMART serkin_6 84 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0346 422 Gene3D Transferase(Phosphotransferase) domain 1 164 412 - -
Acco03g0346 422 FunFam Glycogen synthase kinase-3 beta 68 163 - -
Acco03g0346 422 CDD STKc_GSK3 79 371 IPR039192 -
Acco03g0346 422 FunFam Shaggy-related protein kinase kappa 164 412 - -
Acco03g0346 422 MobiDBLite consensus disorder prediction 40 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0346 Acco-ChrAcco03 4254666 4261769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0346 90 376 Core Cell Cycle Gene Families AT1G76540 35.452 2.35e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Acco03g0346 Pkinase 2.4e-64 CL0016