Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0316 ATGCTTGTAATTGTGTTAATAATGCAGTATAGTAGGAAGGATGAAGAAGAGAAGACATTGATGGTTCCAGCACCTCGGTTTGGTTACACGGATATTCCACCAGATGATGGGTTCATTTGGAGAAAATATGGTCAAAAAGTGATCCTCGGCTCTATTTACCCCAGGCCACTAACTGGTGTAGAAAGTGACATACAGCAGCAGCCACTCTTGTCCACATCTCCATCTTCATCAGTTCTACCACAACTAATATTAGGTAAAACGGGTGAGATAGTGATTAGTGAGACACTGGATCCTTCCAATGACAAGGTTGACAAGGATAGGAGTTTTGAATCTGATCTCGACTCTCTCTTTGACAACAGTGACATTGAGCAGATCATGCTCACATCTAGAGCTAGGAAGACAGATATGTATGACTTGTTGGGTATGATGTGTGTTGCTTCTTGTTTACCATACAAAAGGCAAGCAGTATACGAGCTCAACAATTATTCCATATCTGATGTAATCTCAAAATTCAAGGGGTTAAAACATTTAAGGATTGATGTGAACCCTGATGATGAGCGGTGGCCCACCCTGGTTGACATAATGACTCAATTTGGGAATGATGATGGTGCTGACATTGATGATGATGCACCAGTTTATCCCCCACAACCATATGGAGCACAACCAATGGTTCATCTTCAGTTAATGGGAACTCAACAAGTTCGTGTTCCTCTACCAACAGATGCAGTTGAGGAGCCTGTATTTGTCAATGCAAAAGAGTACCATGGTATATTGAGACGTAGACAGTCTCGTGCCAGAGCTGAATCATTAAATAAATTTATCAAGAATCGCAAGGATGAGTTGTCATCAACTGACAAATCAATGTCCAATACCAATCTCAATCCTGACCTAAAGGATCTGATGGTGTCATCAACAGATAAATCACTGTCCAATACCAATCTCAATCCTGATCAAAAGGATCTGGTGGTGTCATCAACGGATAAATCACTGTCCAATACCAATCTCAATCCTGACCCAAGAGAATCTGCTCATCAGATAGGATTTCCTAAAACTACAGAAAATTTCCAACCAATACTAGCCTTAGATGTGGCACCATGTGCTTCAGGCTGGTTCTGCACAACCCCACAGGTTTTGCGTAGTAAGGCTAGTGATCATGATGTCATTATGGTGGGAGTGGCCACGACAATTATGTCACGTGATGTAGATATTGGGGTGCGCTTCAGCTTTGTGCTCTGCATATTCTATGTCCTCACTCATGATCTTTAG 1266 0.4179 MLVIVLIMQYSRKDEEEKTLMVPAPRFGYTDIPPDDGFIWRKYGQKVILGSIYPRPLTGVESDIQQQPLLSTSPSSSVLPQLILGKTGEIVISETLDPSNDKVDKDRSFESDLDSLFDNSDIEQIMLTSRARKTDMYDLLGMMCVASCLPYKRQAVYELNNYSISDVISKFKGLKHLRIDVNPDDERWPTLVDIMTQFGNDDGADIDDDAPVYPPQPYGAQPMVHLQLMGTQQVRVPLPTDAVEEPVFVNAKEYHGILRRRQSRARAESLNKFIKNRKDELSSTDKSMSNTNLNPDLKDLMVSSTDKSLSNTNLNPDQKDLVVSSTDKSLSNTNLNPDPRESAHQIGFPKTTENFQPILALDVAPCASGWFCTTPQVLRSKASDHDVIMVGVATTIMSRDVDIGVRFSFVLCIFYVLTHDL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0316 421 SMART WRKY_cls 34 75 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco03g0316 421 MobiDBLite consensus disorder prediction 325 345 - -
Acco03g0316 421 Gene3D - 243 287 - -
Acco03g0316 421 MobiDBLite consensus disorder prediction 325 340 - -
Acco03g0316 421 ProSiteProfiles NF-YA/HAP2 family profile. 243 278 IPR001289 GO:0003700|GO:0006355
Acco03g0316 421 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 216 278 IPR001289 GO:0003700|GO:0006355
Acco03g0316 421 ProSiteProfiles WRKY domain profile. 35 55 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco03g0316 421 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 245 280 IPR001289 GO:0003700|GO:0006355
Acco03g0316 421 Pfam WRKY DNA -binding domain 35 55 IPR003657 GO:0003700|GO:0006355|GO:0043565
Acco03g0316 421 MobiDBLite consensus disorder prediction 278 298 - -
Acco03g0316 421 SMART cbf3 242 295 IPR001289 GO:0003700|GO:0006355
Acco03g0316 421 Gene3D WRKY domain 16 62 IPR036576 GO:0003700|GO:0006355|GO:0043565
Acco03g0316 421 SUPERFAMILY WRKY DNA-binding domain 31 55 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0316 Acco-ChrAcco03 3868995 3879151 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0316 214 284 CCAAT-HAP2 Transcription Factor Family AT1G30500 73.239 1.01e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Acco03g0316 CBFB_NFYA 3.2e-08 No_clan