Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0278 ATGGAACTTTCTAGTGGAGAAACAGAAATGCCAATCCCAATAAAGAGTACTACATATGGTGGGGAACATGGTAATGGCCATGGGCATGAGGGACATGGGAACCTGGCCCATCATCATCATCTCCACCATGGCCAAGACCCTTCTAATGGCTCCTCCATTACACAAAAACAAGCCCTTCAAGATCATCATCAGGACCATGTACCCTACATGAAGAAGAAGAAAGAGGTAGTAATAAGGTACAGAGAGTGCCTTAAGAATCATGCAGCTTCCTTGGGAGGTAATGTCCTTGATGGCTGTGGTGAGTTCATGCCTAGTGGAGAAGAAGGCACCATTGAGGCCTTAACCTGCTCAGCTTGCCACTGTCACAGAAATTTCCACAGAAAAGAAGTACAAGGTGATGACCCTCCTCCTCCTTCTTCTTATTACAAATTTGGGAGGAAATTATACCTCGGAGATCTTCATCAGAAGAGTGTCCTGGCAACAGCCCAAGAACAAGCACTTGTGGGGTACCCTACAGGCAACATTCTGCCATCAAGAACTGTACCACCTCCACCACACCAGATGATCCTGCCCTACAATGTAGTAGGGCCCACATCAGGGCCACTAGTTCCTTCGGAATCAGATGAACAAGAAGATGTCGGCGGCGGTGGCGGAATGGTGGTGAGTAGTGGTAGGCCAGCATCATCATCACAGATGGTGAAGAAGAGGTTCAGGACAAAGTTCACTCAGGAGCAGAAGGAGAAGATGCTGGATTTTGCTGATAGAGTTGGGTGGAAGATTCAGAAGCAGGAAGAATCTGTTGTGCAACAGTTCTGTCAAGAGATTGGAATCAGAAGAAGAGTTCTCAAGGTTTGGATGCACAACAACAAACACAATCTAGCCAAAAAAATTAATAATCCTCCTCCGCCACCCCCACCACCAACAACAGCTGCTTTAGTTAGTTAA 945 0.4667 MELSSGETEMPIPIKSTTYGGEHGNGHGHEGHGNLAHHHHLHHGQDPSNGSSITQKQALQDHHQDHVPYMKKKKEVVIRYRECLKNHAASLGGNVLDGCGEFMPSGEEGTIEALTCSACHCHRNFHRKEVQGDDPPPPSSYYKFGRKLYLGDLHQKSVLATAQEQALVGYPTGNILPSRTVPPPPHQMILPYNVVGPTSGPLVPSESDEQEDVGGGGGMVVSSGRPASSSQMVKKRFRTKFTQEQKEKMLDFADRVGWKIQKQEESVVQQFCQEIGIRRRVLKVWMHNNKHNLAKKINNPPPPPPPPTTAALVS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0278 314 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 60 293 - -
Acco03g0278 314 MobiDBLite consensus disorder prediction 1 65 - -
Acco03g0278 314 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 79 130 IPR006456 -
Acco03g0278 314 Gene3D - 220 295 - -
Acco03g0278 314 MobiDBLite consensus disorder prediction 293 314 - -
Acco03g0278 314 FunFam Zinc-finger homeodomain protein 2 222 295 - -
Acco03g0278 314 MobiDBLite consensus disorder prediction 297 314 - -
Acco03g0278 314 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Acco03g0278 314 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 80 129 IPR006456 -
Acco03g0278 314 Pfam ZF-HD protein dimerisation region 78 130 IPR006456 -
Acco03g0278 314 NCBIfam homeobox domain, ZF-HD class 234 290 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0278 Acco-ChrAcco03 3503369 3504313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0278 67 299 ZF-HD Transcription Factor Family AT2G02540 53.498 1.73e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Acco03g0278 ZF-HD_dimer 2.2e-29 No_clan