Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0202 ATGGGAGAGCAAAAGCATAGTGTTCCAGCTCTGCAATGGATGCGTGACCCTGTTGATGTCACTCTATCTGAAGAATTCCCTCTCGAACAAGTTCCTTGTCTTCACCCAAAGTTGAAGTTGGCATTGCAGAATATGGGCATCTCTAGTCTCTTTCCTGTGCAAGTTGCAGTTTGGGAAGAGACAGTTGGACCTGGTAATTTTGAGCGAGACCTTTGTATAAATTCTCCCACTGGAAGTGGAAAAACTTTAGCTTATGCTCTACCAATTGTGCAAATGCTGTCAAACCGTGTTGTAAAATGCTTGAGAGCTTTAGTGGTGGTGCCCACTCGTGATCTTGCCTTACAGGTCAAAGAAGTTTTTGATGCCATTGCGTCTCCATTAGGTTTACATGTTGGTGTGGCTGTTGGTCAATCTTCAATAGCTGATGAGATTTCTAAGCTTGTGGATATACCAGGACATGAGATAGGCATGTGTTATGATCCAGAGGATATATCTCTTAATTACCAACTTGGCTTCCAAAGCAAGGTGGATATATTGGTAGCTACCCCTGGACGGCTCATGGACCACATCACCACTACTAAAGGGTTCACACTTGAGCATCTTTATTATCTTGTGGTTGATGAAACAGATCGGCTTCTTCGAGAGGCCTACCAATCCTGGTTACCTACTGTGCTGGAACTAACTCGATCTATGGACAAGAATATTTATCCACCAGCTGGTTCATTTCTTCTTAATTCATTTAGTGCATTAAGCACTAGAAGGAGATGTGGAGTTGAGAGGGGATTTAAAGATAAACCTTACCCCAGGTTGGCAAAGATGGTTCTATCTGCAACAATAACCCAGGACCCAGGAAAGCTTGTCCAACTGGATCTGCATCATCCAATATTCTTGAAAGCTGGGCAAATGCGTTATAGGCTTCCTGAAAATTTGGAATCGCTTAAAGTGATCTGCGAAACAAAGGTCAAACCCTTGTATTTGGCTGCCCTTTTAAAAACATTGGGACGAGAAAAATGCATTGTTTTTACCAAATCTGTTGATTCAACACATCGTCTGTGCAAGTTACTGAACTATTTCAGTGATCTTCAAATTAAGATAAAGCAATATTCTGGTCTTCATCGTCAACGTGTAAGAAGTAAGACATTGAAGGAATTTCGGAAAGGGGAGTTTCAAGTGCTTGTGTCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTGAGAAATGTTATTAATTATGACATGCCGAAACACATAAAGACTTATGTTCATCGAGCTGGTAGGACAGCAAGAGCTGGGCAGGCTGGACGTTGCTTCACACTGATGTCCAAAGATGAGGCTAGGCGTTTGAAGAAATTGTTGCAGAAGGCTGATAACAGTACTTGCAGTGATCACACACTGCCCTCCAGTTTGATTGAAGAACTTCATGCCACTTACCAATCAGCGCTGAAGAAATTTAAAGAGACAGTTTTGGAAGCCGGAAAGAAACCCAAGAGGAGTTCAGAGACTAGTCAAGCAAACAAAGTTAATGAAAATGAGCATACAGGGGAATAG 1554 0.4221 MGEQKHSVPALQWMRDPVDVTLSEEFPLEQVPCLHPKLKLALQNMGISSLFPVQVAVWEETVGPGNFERDLCINSPTGSGKTLAYALPIVQMLSNRVVKCLRALVVVPTRDLALQVKEVFDAIASPLGLHVGVAVGQSSIADEISKLVDIPGHEIGMCYDPEDISLNYQLGFQSKVDILVATPGRLMDHITTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTRSMDKNIYPPAGSFLLNSFSALSTRRRCGVERGFKDKPYPRLAKMVLSATITQDPGKLVQLDLHHPIFLKAGQMRYRLPENLESLKVICETKVKPLYLAALLKTLGREKCIVFTKSVDSTHRLCKLLNYFSDLQIKIKQYSGLHRQRVRSKTLKEFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKHIKTYVHRAGRTARAGQAGRCFTLMSKDEARRLKKLLQKADNSTCSDHTLPSSLIEELHATYQSALKKFKETVLEAGKKPKRSSETSQANKVNENEHTGE 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0202 517 Pfam DEAD/DEAH box helicase 52 285 IPR011545 GO:0003676|GO:0005524
Acco03g0202 517 Gene3D - 17 300 IPR027417 -
Acco03g0202 517 Pfam Helicase conserved C-terminal domain 322 433 IPR001650 -
Acco03g0202 517 MobiDBLite consensus disorder prediction 493 517 - -
Acco03g0202 517 MobiDBLite consensus disorder prediction 503 517 - -
Acco03g0202 517 CDD DEADc_DDX51 38 294 - -
Acco03g0202 517 FunFam ATP-dependent RNA helicase DDX51 15 300 - -
Acco03g0202 517 Gene3D - 309 516 IPR027417 -
Acco03g0202 517 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 325 475 IPR001650 -
Acco03g0202 517 SMART ultradead3 46 316 IPR014001 -
Acco03g0202 517 CDD SF2_C_DEAD 315 441 - -
Acco03g0202 517 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 297 IPR014001 -
Acco03g0202 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 455 IPR027417 -
Acco03g0202 517 PANTHER RNA HELICASE 34 488 - -
Acco03g0202 517 SMART helicmild6 349 433 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0202 Acco-ChrAcco03 2482698 2494988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0202 70 450 Eukaryotic Initiation Factors Gene Family AT3G13920 24.607 9.40e-29 116