Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0195 ATGTCGTCGTCTCGTACCGTTACCGGAATTTCTAGCGGCAAAACCCGCGTCGGAAAGTTCGAGCTGGGTCGGACCCTCGGTGAGGGCAATTTCGCCAAGGTAAAGTTTGCCCGGAATGTCGAGACCGGAGAAAATGTGGCGATCAAGATTATTGACAAGGACAAGATTCTCAAACACAAAATGATTTACCAGATAAAGCGAGAGATTTCTACAATGAAATTGATCAGGCACCCAAATGTCATACGCATGTATGAGGTGATGGCTAGCAAGACCAAGATATATATTGTACTAGAATTTGTGACTGGTGGGGAATTGTTTGATAAAATTGCAAGCAAGGGCAGGTTAAAAGAAGATGAAGCAAGAAAATATTTCCAGCAGCTTATATGTGCCATGGATTACTGTCACAGTAGAGGTGTTTGTCATAGGGACCTAAAGCCTGAAAATTTGTTGCTGGATGCTAATGGAGGTCTTAAAGTTTCAGATTTTGGATTGAGTGCACTACCTCAACAGCTTCGAGAAGACGGGCTGCTTCATACAACATGTGGTACACCAAATTATGTTGCCCCAGAGGTGATCCACAACAAGGGCTATGATGGCACAAAGGCAGATCTTTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGGCTGGCTACTTGCCCTTTGAAGATAATAACATTATGGCTTTATATAAAAAGATCTTTAAGGCTGATTTCACATGCCCTCCTTGGTTCTCATCAAGTGCAAAGAAATTAATCAAGAGAATTCTTGACCCTAATCCTGCTACACGAATAACATTTGCTGAGGTAATTGAGAATGATTGGTTTAAGAAGGGATATGTGCCTCCTAGATTCGAGCAAGCTGATGTTAGTCTTGATGATGTAGATGCTATATTCAGCGAATCAGTGGATTCTCAAAATTTAGTTGTTGAGAGGCGAGAAGAGGCACCAGTTGCACCTATGGCTATGAATGCTTTCGAACTTATCTCTACGTCTCAAGGCCTTAACCTTAGTAGTCTTTTTGAGAAACAAATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTGCAGCGAATGAGATAATTTCAAAAATTGAGCAAACAGCGACACCAATGGGTTTTGATGTTAGGAAGAATAACTACAAGTTAAAGCTTCAAGGAGAAAAGAGTGGACGCAAAGGACATCTATCTGTTGCGACTGAGATATTTGAGGTGGCCCCATCACTTTGCGTGGTTGAGCTCCGCAAGTCTGGAGGAGATACTCTGGAATTTCACAAGTTCTACAAGAACCTATCTACGGGGCTGAAAGATGTTGTTTGGAAAGCAGAACCTATAGGTGAAGAAACAAATGGTGGTGCTGCGACTGGATCAAGATAG 1380 0.4174 MSSSRTVTGISSGKTRVGKFELGRTLGEGNFAKVKFARNVETGENVAIKIIDKDKILKHKMIYQIKREISTMKLIRHPNVIRMYEVMASKTKIYIVLEFVTGGELFDKIASKGRLKEDEARKYFQQLICAMDYCHSRGVCHRDLKPENLLLDANGGLKVSDFGLSALPQQLREDGLLHTTCGTPNYVAPEVIHNKGYDGTKADLWSCGVILFVLMAGYLPFEDNNIMALYKKIFKADFTCPPWFSSSAKKLIKRILDPNPATRITFAEVIENDWFKKGYVPPRFEQADVSLDDVDAIFSESVDSQNLVVERREEAPVAPMAMNAFELISTSQGLNLSSLFEKQMGLVKRETRFTSKCAANEIISKIEQTATPMGFDVRKNNYKLKLQGEKSGRKGHLSVATEIFEVAPSLCVVELRKSGGDTLEFHKFYKNLSTGLKDVVWKAEPIGEETNGGAATGSR 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0195 459 CDD STKc_SnRK3 19 274 - -
Acco03g0195 459 Pfam NAF domain 319 379 IPR004041 GO:0007165
Acco03g0195 459 Gene3D Phosphorylase Kinase; domain 1 8 99 - -
Acco03g0195 459 Gene3D Kinase associated domain 1, KA1 317 442 - -
Acco03g0195 459 FunFam Non-specific serine/threonine protein kinase 316 442 - -
Acco03g0195 459 SMART serkin_6 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0195 459 CDD CIPK_C 323 438 - -
Acco03g0195 459 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 431 - -
Acco03g0195 459 ProSiteProfiles NAF domain profile. 317 341 IPR018451 GO:0007165
Acco03g0195 459 Gene3D Transferase(Phosphotransferase) domain 1 100 280 - -
Acco03g0195 459 FunFam Non-specific serine/threonine protein kinase 11 99 - -
Acco03g0195 459 SUPERFAMILY Protein kinase-like (PK-like) 17 294 IPR011009 -
Acco03g0195 459 FunFam Non-specific serine/threonine protein kinase 13 315 - -
Acco03g0195 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Acco03g0195 459 Pfam Protein kinase domain 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0195 459 ProSiteProfiles Protein kinase domain profile. 20 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco03g0195 459 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0195 Acco-ChrAcco03 2421892 2427820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0195 1 449 CBL-interacting serine-threonine protein kinases AT1G01140 68.352 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Acco03g0195 Pkinase 2.9e-75 CL0016