Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0188 ATGAGACTCTCTTCAGCTGGTTTTACTCCTTCACCTCAGGAAGGAGAAAAGCGAGTTCTAGATTCTGAGCTCTGGCATGCTTGTGCTGGTCCTCTTGTTTCCCTTCCAGCTGTTGGAAGTCGCGTCGTCTACTTCCCCCAGGGCCACAGTGAACAGGTTGCTGCATCAACTAACAAGGAGGTGGATGTCCATGCCCCAAACTACCCAAGCTTACATCCCCAACTTATCTGTCAACTTCATAATGTGACTATGCATGCTGATGCAGAGACGGATGAAGTATACGCTCAGATGACCTTGCAACCTCTGAATCCTCAAGAACAAAAGGAGTCATACCTTCCAGCAGAGTTGGGCGCTTCAAGTAAACAGCCGACAAACTACTTTTGCAAAACTTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCTGTTCCTCGTCGGGCTGCTGAGAAAGTTTTTCCTCCATTGGATTTCACTCAGCAGCCTCCTTGCCAAGAGTTAATTGCTCGGGACCTGCACGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCTAAACGACATCTACTTACAACAGGATGGAGTGTCTTTGTTAGTGCAAAAAGGCTTGTTGCCGGCGATTCTGTGCTGTTTATTTGGAATGACAAGAATCAATTGCTTCTTGGTATTCGACATGCAAATCGATCACAAACAGTGATGCCTTCATCAGTGCTCTCAAGCGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCACATGCAGCTGCAACAAACAGCCGTTTCACCATTTTCTACAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCCTAGCAAAGTATGTTAAAGCTGTGTATCATACCCGAGTTTCAGTTGGCATGCGCTTCCGGATGTTGTTTGAAACAGAGGAATCAAGTGTCCGGCGATACATGGGCACAATTACCAGCATTAGTGACCTGGATCCTGTGAGGTGGCCTAATTCACACTGGCGATCAGTTAAGGTTGGCTGGGATGAGTCCACAGCAGGAGATAGGCAACCTAGAGTTTCCTTGTGGGAAATTGAGCCGTTGACAACATTTCCAATGTATCCTTCCCCATTCCCTCTTAGGCTTAAACGACCATGGCATCCTGGACTGCCTTCTTTCCATGGCATAAAGGATGATGATTTGGGCATGAATTCTCCACTGTTTTTGGATAGAGGGCTTCAGTCTCTTAATTATCCTGGAATTGGGGTTACTCCTTGGATGCAACCAAGGTTTGATCCGTCCTTTCTGAATTTGCAAACCGACGTGTACCAAGCCATGGCCGCTGCTGCACTTCAGGATATAAGGTCTATAGATCCTTCAAAACAACATGCTGCGTCCCTGCTTCAATTTCAGCAACCACAGAACTTCCCCAACCGGAATGCTGCTTTGGTGCAGGCCCAGATGATGCATCAGTCTCAACCTCAACAAACTTTTCAAAATAACCCAGAAAATATGCATCCATCTCAATCTGAGGCTCTAAGTCAGACTCATCTTCAGCATCGTAACTCTTTCTTTAATCAGCAGCAGCAGCAGCCGCAACAGCAACATCAACAGCAAAGTTTTTCTGATCAGCAGATTTCAAATTCTGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAACCTCAGTCCCCACCGACGCAAGCTATTTCTTCATTGTGCCATCAGCAAAGTTTTTCTGATTCAAATGGGAACAATGTAGCTACTGCAATGGTTTCTCCCCTGCATAATATTTTGGGTTCATTTCCCCAAGAAGAAACTTCCCACCTTCTCAATACTCCTAGGATAAGCTCTTGGATACCCATTCAACCTTCTACTACAGCTACTTGGCCTTCCAAGCGTGTTGCTGTGGACCCTCGTCCTTCTTCTGGTGCTTCTCAATGTGATCTGCTTCATATGGATCAGTTACGGCAGCGCCCGAATATTTTGTCTCAAAATGCAGTTACTTTGCCACCCTTTCCCGGAAGGGAGTGTTCAATTGACCAAGAAGGGAGCACTGATCCACAAAACCATCTTGTATTCGGTGTTAATATAGATCCCTCGTCTCTATTATTGCATAATGGGATGTCGAGCCTTAAGGGAGTCAGCAACAATGTTGATTCTACAACCATACCTTTTCAATCTTCTAATTACCTGAATACAACAGGCTCTGACTCTACTTTGAATCCTGCGATGTCACAAACCATTGGTGATTCAGGATTCTTGCAGGCCCCAGCAAATATGGGCCAAGGAAATTCTTCCAATGAAACCTTTGTAAAGGTTTACAAGTCAGGGTCCTTTGGAAGATCTTTGGACATCACTAAATTCAGCAGCTACCATGAGCTGCGCCGTGAGCTTGCTCGTATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTAAGATCAGGCTGGCAGCTTGTATTCGTTGACCGAGAGAACGACGTTCTTCTCCTTGGTGATGGCCCTTGGCCGGAATTTGTCAACAGTGTATGGTGTATCAAGATACTTTCCCCACAAGAAGTGCAACAAATGGGCAATAATGGTTTCCAGCTTCTGAATTCGGTTCCAATTCAAAGACTTTGTGAAGACTTTGTGAGCCGACAGGACCCAACAAGTTTAAGCTCTGGGATCACGACTGTGGGGTCTCTAGACTACTAA 2670 0.4607 MRLSSAGFTPSPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDVHAPNYPSLHPQLICQLHNVTMHADAETDEVYAQMTLQPLNPQEQKESYLPAELGASSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPCQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRHANRSQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWHPGLPSFHGIKDDDLGMNSPLFLDRGLQSLNYPGIGVTPWMQPRFDPSFLNLQTDVYQAMAAAALQDIRSIDPSKQHAASLLQFQQPQNFPNRNAALVQAQMMHQSQPQQTFQNNPENMHPSQSEALSQTHLQHRNSFFNQQQQQPQQQHQQQSFSDQQISNSVSTMSQFVSAPQPQSPPTQAISSLCHQQSFSDSNGNNVATAMVSPLHNILGSFPQEETSHLLNTPRISSWIPIQPSTTATWPSKRVAVDPRPSSGASQCDLLHMDQLRQRPNILSQNAVTLPPFPGRECSIDQEGSTDPQNHLVFGVNIDPSSLLLHNGMSSLKGVSNNVDSTTIPFQSSNYLNTTGSDSTLNPAMSQTIGDSGFLQAPANMGQGNSSNETFVKVYKSGSFGRSLDITKFSSYHELRRELARMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGFQLLNSVPIQRLCEDFVSRQDPTSLSSGITTVGSLDY 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0188 889 SMART B3_2 127 229 IPR003340 GO:0003677
Acco03g0188 889 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Acco03g0188 889 SUPERFAMILY CAD & PB1 domains 756 835 - -
Acco03g0188 889 MobiDBLite consensus disorder prediction 477 571 - -
Acco03g0188 889 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 849 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco03g0188 889 FunFam Auxin response factor 291 363 - -
Acco03g0188 889 Gene3D - 291 363 - -
Acco03g0188 889 Gene3D - 125 228 IPR015300 -
Acco03g0188 889 ProSiteProfiles PB1 domain profile. 760 844 IPR000270 GO:0005515
Acco03g0188 889 FunFam Auxin response factor 755 849 - -
Acco03g0188 889 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Acco03g0188 889 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco03g0188 889 CDD B3_DNA 126 219 IPR003340 GO:0003677
Acco03g0188 889 Gene3D - 755 849 - -
Acco03g0188 889 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Acco03g0188 889 FunFam Auxin response factor 125 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0188 Acco-ChrAcco03 2339985 2345057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0188 1 479 B3 DNA Binding Superfamily AT1G30330 86.777 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco03g0188 B3 1.2e-21 CL0405