Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0180 ATGGTGCTGAAAGCTTGCGTCAAGGTGGGAGAAAAGAATGTTGCAGAAAATTCATCTGCAACTGAATGGGGGAAGGTTTCTGTTGTGTTGTTTGACATGGATGGTGTCCTCTGCAACAGTGAAGACCTCTCTAGAAGAGCGACCGTTGATGTGTCCACGGAGATGGGCGTCCAATCTTCTTCTTCTTCTTCTTTCTCTGTTCTGATCAAACTAGGGTTCATGGGTCGTCGGAAGATCGAGATGAAGCTTGTGAGAGACTCAAGCTCGAGGCAAGTTACCTTCACCAAACGTCGCAATGGCGTCTTCAGGAAAGCGGACGAGCTCGCAACCTTGTGTGGAGCAGAAGTCGCCATCATCGCCTTCTCTCCCGGCGGAAAGCCTTTCTCCTATGGCCACCCAAGCGTCAACGACATCACCAACAGGTTCCTCCGTCGTGGCTCCGTCGAAGACAATAATGGCGGATCAAAGGGTCGTCGTCGGGCAAGTAGTTATAATAATAATGGTGAAGCTGTGATTGAGAAGCTGAACCAGAAGCTTATGAATCTGATGAATGAGGCTGAGGTGGAGAAGAAGAAGGGAGAGATGCTTGACAAGAGGTTGAAGAAGATGAATTTGAAATTGAATAATGAGGGGAAGCTGCAATTGGAAGGTTTGAATAAGGAAGAACTTGGGAAGTTGAAGAAGTCTCTTGAAGAAATGAGAGATGAAGTTGAAGAGGGTGTGAAGCAATTGGAGGCTTCGTCTTGCTTGATGCTTCTCGCTCACAAGGCTGTGGACAAGAAAGAGAATTGCATTGCTTCTGCAAATTAA 810 0.4704 MVLKACVKVGEKNVAENSSATEWGKVSVVLFDMDGVLCNSEDLSRRATVDVSTEMGVQSSSSSSFSVLIKLGFMGRRKIEMKLVRDSSSRQVTFTKRRNGVFRKADELATLCGAEVAIIAFSPGGKPFSYGHPSVNDITNRFLRRGSVEDNNGGSKGRRRASSYNNNGEAVIEKLNQKLMNLMNEAEVEKKKGEMLDKRLKKMNLKLNNEGKLQLEGLNKEELGKLKKSLEEMRDEVEEGVKQLEASSCLMLLAHKAVDKKENCIASAN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0180 269 Coils Coil 165 192 - -
Acco03g0180 269 PRINTS MADS domain signature 111 132 IPR002100 GO:0003677|GO:0046983
Acco03g0180 269 PRINTS MADS domain signature 96 111 IPR002100 GO:0003677|GO:0046983
Acco03g0180 269 PRINTS MADS domain signature 76 96 IPR002100 GO:0003677|GO:0046983
Acco03g0180 269 SMART madsneu2 74 133 IPR002100 GO:0003677|GO:0046983
Acco03g0180 269 ProSiteProfiles MADS-box domain profile. 74 134 IPR002100 GO:0003677|GO:0046983
Acco03g0180 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 85 130 IPR002100 GO:0003677|GO:0046983
Acco03g0180 269 MobiDBLite consensus disorder prediction 146 167 - -
Acco03g0180 269 SUPERFAMILY HAD-like 23 70 IPR036412 -
Acco03g0180 269 Coils Coil 220 247 - -
Acco03g0180 269 PANTHER MADS BOX PROTEIN 76 238 - -
Acco03g0180 269 FunFam Agamous-like MADS-box protein AGL62 86 152 - -
Acco03g0180 269 Gene3D - 87 152 IPR036879 GO:0003677|GO:0046983
Acco03g0180 269 SUPERFAMILY SRF-like 74 146 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0180 Acco-ChrAcco03 2217490 2222102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0180 74 256 Type I MADS-box Gene Family AT2G34440 42.077 1.30e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco03g0180 SRF-TF 3.5e-22 No_clan