Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0161 ATGTATGAGCATGCATCATCCTTTGATCCCAACACGATGGCAGATGGCACTGTTTCCCTAAAAGACGGACTTCCCGATGCACCGCCGTTCATGGCTGCCGGAAACTTCACAAGCAATAACAATAACTTGGACAAAAATCTCAAGCTCACAGTGGAAGAGCTCTCCTATCACCAGCATCAGAATCATCCACCGCCGCACCCAGAAGACGTCTCCGCCTTTGCTAACGGCGGCGGCGGAGACATCTCATACCCTCAACATCTTGTTCTGAACGTAGAAAATCCCTACAACAGTGAGACTTTGGTTCATCAAGTCATCGATGTCCTCAATCATGATCAATCCACTTGGGACCCTAAAGTTCAAGAGTTTCAGGGTGTGAATTATTCTAACCACCACCACCATGAACAACAGCAACCTCAACAATTTCATCAAATTGAGACCCAAAGCTACAATTCATCTTCAATACTCGACCCTCCTCCCCCGTACCCTTCTTCTAATCTGCTCGATCTCCTCCATTTCAACCCAACCCAGAAGATACCTAATATCCCAAATTCCATGGGGTATCTCGGCGACATTCCTATGGGATCAGATAGCACAAGCGCGTGTTCTGTGTTGTATGATCCTCTGCTTCATTTGAATCTGCCTCCACAGCCTCTGGCGCTAAGAGAGCTGTTTCAGTCTCTTCCTCGAGGCTATAGCTTGCCAACTAGCTCCAGAAATGGTTCTCTTTTTGGTGGTGGGGATGAGATTGAGGGGAATGGGATTGTGTATCAGGATGGAGATGGAAGCCAGCTTGACAATGGGGTTTTGGAATTTGACAGAGGCACTGCTCGTGTGGGTAAAGGAAGACAAGCGAAAGGCACAAAGCATTTTGCCACTGAGAAACAAAGAAGAGAGCAACTTAATGGCAAATACAATGTCTTGAGGAGTCTGATCCCAAGCCCCACCAAGATGGACAGAGCATCTGTGGTGGGAGATGCCATTAACTATATTAAAGAGCTGATGAGAACAGTGAATGAGCTGAAATTGTTGGTGGAGAAGAAAAGGTTTGGAATGGACAGGTGCAAGAGGCAGAAACCAGAAGATGATGGTGGAGAGAGCTGTAACATGAAGCCCTATGGTGATCATCATCCAGAAGGATGCATAAGGACCTCATGGCTTCAGAGGAAATCCAAAGACACCGAGGTTGATGTCCGGATAATCGACAATGAAGTCACAATCAAACTCGTTCAGAGGAAGAAGATCAGCTGCTTGCTGTTTGTCTCCAGGGTTCTTGATGAACTCCAGCTGGATCTTCACCATGTTGCAGGTGGACATGTTGGGGAATATTGCAGTTTCTTGTTCAACAGCAAGATATGTGAAGGTTCTTCAGTGTATGCAAGCGCCATAGCAAACAAGGTGATTGAGGTTTTGGACAGGCAGTATGCAGCAGCTGTTCCACATACTACCAGCAGCTATTAA 1458 0.4657 MYEHASSFDPNTMADGTVSLKDGLPDAPPFMAAGNFTSNNNNLDKNLKLTVEELSYHQHQNHPPPHPEDVSAFANGGGGDISYPQHLVLNVENPYNSETLVHQVIDVLNHDQSTWDPKVQEFQGVNYSNHHHHEQQQPQQFHQIETQSYNSSSILDPPPPYPSSNLLDLLHFNPTQKIPNIPNSMGYLGDIPMGSDSTSACSVLYDPLLHLNLPPQPLALRELFQSLPRGYSLPTSSRNGSLFGGGDEIEGNGIVYQDGDGSQLDNGVLEFDRGTARVGKGRQAKGTKHFATEKQRREQLNGKYNVLRSLIPSPTKMDRASVVGDAINYIKELMRTVNELKLLVEKKRFGMDRCKRQKPEDDGGESCNMKPYGDHHPEGCIRTSWLQRKSKDTEVDVRIIDNEVTIKLVQRKKISCLLFVSRVLDELQLDLHHVAGGHVGEYCSFLFNSKICEGSSVYASAIANKVIEVLDRQYAAAVPHTTSSY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0161 485 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 356 IPR036638 GO:0046983
Acco03g0161 485 PANTHER TRANSCRIPTION FACTOR BHLH91 1 477 IPR045895 GO:0006355|GO:0048658
Acco03g0161 485 CDD bHLH_AtMYC1_like 289 350 IPR045896 -
Acco03g0161 485 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 333 IPR011598 GO:0046983
Acco03g0161 485 Gene3D - 279 348 IPR036638 GO:0046983
Acco03g0161 485 SMART finulus 290 339 IPR011598 GO:0046983
Acco03g0161 485 Pfam Helix-loop-helix DNA-binding domain 287 333 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0161 Acco-ChrAcco03 2010744 2013095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0161 1 481 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 37.308 7.04e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco03g0161 HLH 6.8e-11 No_clan