Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0145 ATGGCTGATCCTCCCTCTCCTTCTCCTTCTCCCTCCTTCGTCACCACCACCTCCCTCCACCACCATCCCTCCGCCTTGGATCTCACCATCCTCGTCGCTGCCATTGTTTGCGCCTTCCTCTGTGCCCTTGGCCTCAACACCATGCTCCACTGTGTCTTCCAATGCGCCGTCACCGAGCCGATCAAATGGATCGCCTCTCGCCGAATCAATTCCGGCCTTAAGAAGAAAGACATGGTGGCTCTTCCTACTTCCACTTATTACACACACCGCACCTCTTCTTCTTCTACAGCAACTGATTGTGCGATTTGCTTGGCGGATTTCAACGACGGAGATAGAATCAGGTTCCTGCCAGAGTGCAGTCACACATTTCATGTGGCTTGTATTGATAAGTGGTTGCTTTCTCATTCCTCTTGCCCAACTTGCCGCCATTTTCTGAAATCCTCTGTTGTTTCACTTGACACTACTATGCATCTCGTTATACATTAG 486 0.5062 MADPPSPSPSPSFVTTTSLHHHPSALDLTILVAAIVCAFLCALGLNTMLHCVFQCAVTEPIKWIASRRINSGLKKKDMVALPTSTYYTHRTSSSSTATDCAICLADFNDGDRIRFLPECSHTFHVACIDKWLLSHSSCPTCRHFLKSSVVSLDTTMHLVIH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0145 161 SMART ring_2 100 141 IPR001841 -
Acco03g0145 161 Pfam Ring finger domain 99 142 IPR001841 -
Acco03g0145 161 FunFam E3 ubiquitin-protein ligase ATL6 62 148 - -
Acco03g0145 161 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Acco03g0145 161 PANTHER RING-H2 FINGER PROTEIN ATL78 16 148 IPR044602 GO:0016567|GO:0016740
Acco03g0145 161 CDD RING-H2_EL5-like 99 142 - -
Acco03g0145 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Acco03g0145 161 SUPERFAMILY RING/U-box 99 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0145 Acco-ChrAcco03 1890371 1890856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0145 5 145 C3H Transcription Factor Family AT2G17450 41.096 2.10e-33 115