Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0070 ATGGCGCATTCTGCAGAACCTTCATCGTCTTTAAGCTTTACCTCATCTTCCCATTTATCAAATGGCTCTGTTAGCCACAACATGTGCTCTTCTCACGTCTCTGAACCTGCATCCAACCTTGAAGTGATCAGTTTGAGTAAGCTAAGCTCAAGTTTGGAGCTGCTTTTACTTGAATCTGATGTTGACTTTAGTGATGCTGACATCGTTGTTGAAGGAGAAACAGTTGGTGTTCATCGATGTATTCTGGCCTCTAGAAGCAATTTTTTCAACAAATTATTCAAGAAAGATAAAGGGTCTTCGCAGAAAGAAGGAAAATTTAAGTATTGCATGGATGATTTGTTGCCATATGGCAAGGTGGGACTTGAAGCATTTCAAATATTCTTGAGCTATATATATACAGGAAAACTCAAGCCCTCTCCAATGGAAGTGTCAACTTGCGTTGATCATGTTTGTGTCCATGATGCTTGTAGACCAGCAATAAATTTTGCTGTGGAGTTGATGTACGCCTCTTCCATCTTCCAAATACCAGAATTGGTATCACTTTTTCAGCGACGCCTCCTTAATTTTATAGGGAAGGCTTTTGTGGAAGATGTCATCCCAATACTCACTGTTGCTTTTCATTGTCAATTGAGTCACCTTGTCACTCAATGTGTTGATAGGTTAGCACGATCAAACCTTGATCAAAACTCAATTGAGAAAGAGCTTCCCTTAGAACTTGCAGCTAAAGTTAAGCTGCTCCACCGCAACTACCATCACGATGTTGAAAATAACACCTCCGTTGTTGATGACCCAATGCGTCAGAAGAGAATCACTAGAATACACAAGGCTCTAGATTCAGATGATGTCGAGCTTGTTAAACTGCTTTTAACTGAATCAGAGATAACATTGGATGAAGCCAGTGCTCTTCATTATGCTGCAGCCTACTGTGATCCCAAGGTTGTTTCTGAGGTTCTAGGTTTGGGGATGGCTGATGTCAATCTTCGGAATTCTCGGGGCTACACTGTGCTTCACATTGCTGCCATGCGTAAGGAGCCTTCAATTATAGTAGCCCTTCTAACAAAAGGGGCTTGTGCATCAGAGGTGACTTATGATGGTCAGAGTGCTGTTACCATCTGCAGGAGGTTAACAAGACCAAAGGACTATCATGCAAAAACAGAGAAGGGGAAAGAAACAAACAAAGATCGCATATGCATCGATGTTCTTGAAAGAGAAGTGCTGAGAAACCCAATGGCTGGGGATGCCATAATTTCCTCCCACACAATGGCTGATGATCTGCACATGAAGCTACTATATCTTGAGAACAGAGTGGCATTTGCGAAAGTATTCTTCCCTTCAGAAGCCAAATTAGCTATCGACATTGCACATGCTCAGACATCAGAGTTTGCAGGTCTTTCTGCATCAAAAGGTTCAAACGGGAATTTGAGGGAGGTTGATCTAAATGAAACTCCCCTGGCGCAGAATAAAAGACTTCTTACCAGGATGCAGACCCTTATGAAAACAGTTGAGATGGGCCGGCGCTATTTTCCTCATTGCTCAGAAGTGCTTGACAAGTTCATGGAGGACGACCTGCCTGATCTGTTTTACCTGGAGAAGGGCACGCCGGATGAGCAGAAAATCAAGAGAGCACGTTTCATGGAGCTCAAAGAAGATGTTCAGAAGGCTTTCAACAAGGACAAAGCTAATGGGATTCCAGCACCATCGTCCTCATCATCTTTTAGAGGCTCTGTAAATTACAAGGCTAGGAAAGTTTGA 1752 0.4269 MAHSAEPSSSLSFTSSSHLSNGSVSHNMCSSHVSEPASNLEVISLSKLSSSLELLLLESDVDFSDADIVVEGETVGVHRCILASRSNFFNKLFKKDKGSSQKEGKFKYCMDDLLPYGKVGLEAFQIFLSYIYTGKLKPSPMEVSTCVDHVCVHDACRPAINFAVELMYASSIFQIPELVSLFQRRLLNFIGKAFVEDVIPILTVAFHCQLSHLVTQCVDRLARSNLDQNSIEKELPLELAAKVKLLHRNYHHDVENNTSVVDDPMRQKRITRIHKALDSDDVELVKLLLTESEITLDEASALHYAAAYCDPKVVSEVLGLGMADVNLRNSRGYTVLHIAAMRKEPSIIVALLTKGACASEVTYDGQSAVTICRRLTRPKDYHAKTEKGKETNKDRICIDVLEREVLRNPMAGDAIISSHTMADDLHMKLLYLENRVAFAKVFFPSEAKLAIDIAHAQTSEFAGLSASKGSNGNLREVDLNETPLAQNKRLLTRMQTLMKTVEMGRRYFPHCSEVLDKFMEDDLPDLFYLEKGTPDEQKIKRARFMELKEDVQKAFNKDKANGIPAPSSSSSFRGSVNYKARKV 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0070 583 SMART BTB_4 64 190 IPR000210 GO:0005515
Acco03g0070 583 MobiDBLite consensus disorder prediction 558 583 - -
Acco03g0070 583 CDD BTB_POZ_NPR_plant 60 190 - -
Acco03g0070 583 SMART ANK_2a 297 327 IPR002110 GO:0005515
Acco03g0070 583 SMART ANK_2a 331 363 IPR002110 GO:0005515
Acco03g0070 583 SMART ANK_2a 268 296 IPR002110 GO:0005515
Acco03g0070 583 Gene3D - 264 406 IPR036770 -
Acco03g0070 583 ProSiteProfiles BTB domain profile. 64 140 IPR000210 GO:0005515
Acco03g0070 583 FunFam regulatory protein NPR3-like 265 405 - -
Acco03g0070 583 Pfam Ankyrin repeats (3 copies) 274 356 IPR002110 GO:0005515
Acco03g0070 583 Gene3D Potassium Channel Kv1.1; Chain A 29 222 IPR011333 -
Acco03g0070 583 FunFam Regulatory protein NPR3 38 222 - -
Acco03g0070 583 SUPERFAMILY Ankyrin repeat 230 374 IPR036770 -
Acco03g0070 583 MobiDBLite consensus disorder prediction 562 576 - -
Acco03g0070 583 Pfam NPR1/NIM1 like defence protein C terminal 373 571 IPR021094 -
Acco03g0070 583 Pfam BTB/POZ domain 60 180 IPR000210 GO:0005515
Acco03g0070 583 ProSiteProfiles Ankyrin repeat region circular profile. 331 356 - -
Acco03g0070 583 PANTHER REGULATORY PROTEIN NPR3 10 571 IPR044292 GO:0009862|GO:2000022|GO:2000031
Acco03g0070 583 SUPERFAMILY POZ domain 61 189 IPR011333 -
Acco03g0070 583 ProSiteProfiles Ankyrin repeat profile. 331 356 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0070 Acco-ChrAcco03 721997 726755 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco03g0070 NPR1_like_C 2.7e-88 No_clan