Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0055 ATGTTGGGTGGGCTATATGGAGACCTTCCTCCACCCTCATCCGCCGAAGAAGAGAAACCCAATAACTCCAATGTATGGTCGAGCAGCACCAAGATGGCGCCGGCAACCCTTCGCAAGCCGGTTTTCGCACCTCCTCAGACGATCCTGAGAACTCAGAACAAGTCCAAAACCGTTAATTCTTCAGCACCTAAAACAGTGACTTCGACACCGGTCACGGCACCGTCACCGGTGGTGCCCGATGATGCAGCACAACCCGCTCTCGTGGGTGTCCAATCGACGGTGATAGAGGAGTATGACCCTGCGAGGCCGAATGATTATGAGGAGTATCGGAGGGAGAAGAAGAGGAAGGCTAGGGAGGCAGAGATGATGAAAGAGCTCGAGAGGAGACGGCAGGAAGAGGAAGAGAGGGAGAGGAGGGAGAAAGAGGAGCGGGAGAAGGAGAGGGATAGAGAATATGGAGATTCGAGATTGAACATTTCTGGGGAGGAGGCATGGAGAAGGCGTGCGGCTATGAGTGGGGCAGTGCCAAGATCTCCATCGCCACCGCCTAATGGTGACGGTTTTAGCATTGGCAAGTCAGAAACAGGCGGTTTGGGTCTTGGTGCAGGTGGTCAAATGACAGCAGCTCAAAGAATGATGGCAAAGATGGGATGGAAAGAGGGGCAAGGACTTGGGAAGCAGGAGCAAGGAATTACTACTCCATTGATGGCGAAGAAAACAGATAGACGAGCTGGAGTCATTGTGAATGCCAGTGACAATAAGCCGGAAAAGAAATTGAAGACTGTGAATTTCAATGGGCCTCCTACGCGGGTGTTGCTGCTGAGGAACATGGTGGGTCCTGGCGAGGTAGATGATGAGCTTGAAGATGAAGTAGGGTCGGAATGTGCCAAGTATGGGACTGTTACTCGGGTCCTGATATTTGAGATAACAGAGCCAAATTTCCCTGCTGATGAAGCCGTCAGAATCTTTGTGCAGTTTGAGAGGTCTGAAGAAACAACTAAAGCCATTATTGACCTTGATGGTAGGTACTTTGGAGGTAGAGTGGTGCGAGCCTCATTTTATGACGAAGAGAGGTTTGGTAGGAATGAATTGGCTCCAATGCCTGGAGAAGTCCCTGGCTTTTTTTGA 1128 0.5089 MLGGLYGDLPPPSSAEEEKPNNSNVWSSSTKMAPATLRKPVFAPPQTILRTQNKSKTVNSSAPKTVTSTPVTAPSPVVPDDAAQPALVGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMKELERRRQEEEERERREKEEREKERDREYGDSRLNISGEEAWRRRAAMSGAVPRSPSPPPNGDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDNKPEKKLKTVNFNGPPTRVLLLRNMVGPGEVDDELEDEVGSECAKYGTVTRVLIFEITEPNFPADEAVRIFVQFERSEETTKAIIDLDGRYFGGRVVRASFYDEERFGRNELAPMPGEVPGFF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0055 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 270 356 IPR000504 GO:0003723
Acco03g0055 375 MobiDBLite consensus disorder prediction 1 197 - -
Acco03g0055 375 Coils Coil 106 151 - -
Acco03g0055 375 Pfam G-patch domain 208 247 IPR000467 GO:0003676
Acco03g0055 375 MobiDBLite consensus disorder prediction 16 34 - -
Acco03g0055 375 SMART G-patch_5 203 249 IPR000467 GO:0003676
Acco03g0055 375 ProSiteProfiles G-patch domain profile. 205 251 IPR000467 GO:0003676
Acco03g0055 375 Gene3D - 269 355 IPR012677 -
Acco03g0055 375 CDD RRM_UHM_SPF45 268 364 IPR034653 -
Acco03g0055 375 FunFam Putative splicing factor 45 269 355 - -
Acco03g0055 375 SUPERFAMILY RNA-binding domain, RBD 272 358 IPR035979 GO:0003676
Acco03g0055 375 PANTHER SPLICING FACTOR 45 SPF45 1 366 IPR040052 GO:0045292
Acco03g0055 375 MobiDBLite consensus disorder prediction 46 74 - -
Acco03g0055 375 PIRSF SPF45 3 371 IPR040052 GO:0045292
Acco03g0055 375 MobiDBLite consensus disorder prediction 100 163 - -
Acco03g0055 375 SMART rrm2_1 271 352 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0055 Acco-ChrAcco03 561724 564531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0055 211 259 C2H2 Transcription Factor Family AT5G26610 48.214 6.21e-07 48.9