Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0048 ATGTTCCTCCTGCCACGGTGGTTTTTCTCCCATTTCTGTTGGAAGCCGCCTGACTCGCATCATCGAGTTTTCCTTTCTCTCCGAGGCAGAAGAAGATTTCAAACTCTCGGAGATTTGGGCACAGTCTTGCGTGTGAATTTGGAAACCATGACTTCATCTGATCGTGACCTCATTGATAACGAAGCTAATGAGCAGCAGCAGCAATCGAACTCAGAGATGCAGTCTTCATCTACAAACGGAATTTCTGATTCAGGAATTGCTACCCAGAATGCTCAGTATGCAGTGCCTCCTTCACAGATTGGAACTGGACCTGCTATGGCACCGGTTTATCCATACCCCGATCCCTACTACAGGAGCATCTTTACTCCATATGAGTCGCAACCTTATCCCCCACAACCCTATGGAGCACAACCAATGGTTCATCTTCAGTTAATGGGAATTCAACAAGCTGGTGTTCCTCTACCAACAGATGCAGTCGAGGAGCCTGTATTTGTCAATGCAAAACAGTACCATGGTATATTGAGACGTAGACAGTCTCGTGCCAAAGCTGAATCATTAAATAAAGCTATCAAGAATCGCAAGCCATACTTGCATGAATCCCGGCATTTGCATGCATTGAGAAGAGCTCGAGGATGTGGAGGTCGGTTTCTTAATTCAAAGAAAAGCGAGGATCAACAGGATGAGGTGTCATCAACAGATAAATCACTGTCCAATACCAATCTCAATCCTGACCAAAAGGATCTTGCTTAA 750 0.452 MFLLPRWFFSHFCWKPPDSHHRVFLSLRGRRRFQTLGDLGTVLRVNLETMTSSDRDLIDNEANEQQQQSNSEMQSSSTNGISDSGIATQNAQYAVPPSQIGTGPAMAPVYPYPDPYYRSIFTPYESQPYPPQPYGAQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESLNKAIKNRKPYLHESRHLHALRRARGCGGRFLNSKKSEDQQDEVSSTDKSLSNTNLNPDQKDLA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0048 249 MobiDBLite consensus disorder prediction 231 249 - -
Acco03g0048 249 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Acco03g0048 249 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 60 235 IPR001289 GO:0003700|GO:0006355
Acco03g0048 249 MobiDBLite consensus disorder prediction 214 249 - -
Acco03g0048 249 MobiDBLite consensus disorder prediction 62 84 - -
Acco03g0048 249 Gene3D - 159 220 - -
Acco03g0048 249 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Acco03g0048 249 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
Acco03g0048 249 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Acco03g0048 249 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 161 216 IPR001289 GO:0003700|GO:0006355
Acco03g0048 249 ProSitePatterns NF-YA/HAP2 subunit signature. 164 184 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0048 Acco-ChrAcco03 510547 514547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0048 50 235 CCAAT-HAP2 Transcription Factor Family AT1G30500 60.106 6.70e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Acco03g0048 CBFB_NFYA 1.2e-25 No_clan