Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0045 ATGGATAATCGTGGGGGAGTTGGGAGGGCTGCCTCGGGGAACAGAAGACTGAAAAACCTATTGCTTCAGGAAGACAATCGTTTTTGTGCTGACTGCAATGCTAAAGATCCCAAGTGGGCGTCGGTCAATATTGGAGTTTTTATTTGCTTACAATGTTCTAGCGACCACAGAGGCCTTGGTACTCATATATCAAAGGTTAAGTCCGTGACATTGGATGAATGGTCAGATGACGAAATGGATGCCATGATTGAAGTTGGAGGAAATGCTTCTGCTAATAAAATTTATGAGGCTCATATTCCAGACGGATATAGCAAGCCCACACCACATTCCAATAATGAACAGCGTGCAGATTTCATCCGATCCAAGTATGAGCTTCAAGAATTCTTGAAACCTGCTTTGCGCATTGCATCTAGAAAAAGATCTCAAGCGTCAAATTCTTCCAACAAATTCCGAACCACGAGTGGTCCACAGAAAACGGAAGGATTGGTAGAATATATTGGGTTGCTGAAGGTGAAAGTGGAAAAGGGCACTAATTTAGCTGTTCGAGATATGATGTCCAGTGATCCATATGTCGTCTTAAAACTTGGCCAACAGAGAGTTCAGACAAAGGTTGTGAACAGTAACTTGAATCCAGTCTGGAATGAGGAACTTATGCTATCTGTTCCCCAGGAATATGGAACATTGAAATTGCAAGTATATGATCATGATACATTCTCAGCCGATGATATAATGGGAGAGGCAGAAATTGATCTCCAGCCTATGATAACGTCAGCAACGGCATTTGGAAACGCAGAAATGTTTGGCGATATGCAGATTGGAAAATGGTTTAAATCTGATGACAATGCTCTCTTAGAGGATAGCCTAGTCAATATAGTCGATGGAAAGGTTTTGCAGAACATGACTCTCAAGCTCCAGAATGTTGAATCTGGAGAATTATATCTAGAACTTGAATGGTTGCCTCTTGATCAATAG 972 0.4156 MDNRGGVGRAASGNRRLKNLLLQEDNRFCADCNAKDPKWASVNIGVFICLQCSSDHRGLGTHISKVKSVTLDEWSDDEMDAMIEVGGNASANKIYEAHIPDGYSKPTPHSNNEQRADFIRSKYELQEFLKPALRIASRKRSQASNSSNKFRTTSGPQKTEGLVEYIGLLKVKVEKGTNLAVRDMMSSDPYVVLKLGQQRVQTKVVNSNLNPVWNEELMLSVPQEYGTLKLQVYDHDTFSADDIMGEAEIDLQPMITSATAFGNAEMFGDMQIGKWFKSDDNALLEDSLVNIVDGKVLQNMTLKLQNVESGELYLELEWLPLDQ 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0045 323 CDD C2_ArfGAP 166 310 - -
Acco03g0045 323 FunFam stromal membrane-associated protein 1 isoform X1 7 134 - -
Acco03g0045 323 Gene3D C2 domain 164 323 IPR035892 -
Acco03g0045 323 CDD ArfGap 17 123 - -
Acco03g0045 323 Pfam C2 domain 168 256 IPR000008 -
Acco03g0045 323 ProSiteProfiles C2 domain profile. 146 264 IPR000008 -
Acco03g0045 323 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 165 323 - -
Acco03g0045 323 Gene3D Arf GTPase activating protein 7 135 IPR038508 -
Acco03g0045 323 SMART arf_gap_3 14 136 IPR001164 GO:0005096
Acco03g0045 323 ProSiteProfiles ARF GTPase-activating proteins domain profile. 14 142 IPR001164 GO:0005096
Acco03g0045 323 SUPERFAMILY ArfGap/RecO-like zinc finger 15 131 IPR037278 -
Acco03g0045 323 SMART C2_3c 168 263 IPR000008 -
Acco03g0045 323 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 323 IPR044518 GO:0005096|GO:0005543
Acco03g0045 323 Pfam Putative GTPase activating protein for Arf 15 130 IPR001164 GO:0005096
Acco03g0045 323 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 165 320 IPR035892 -
Acco03g0045 323 PRINTS HIV Rev interacting protein signature 45 62 IPR001164 GO:0005096
Acco03g0045 323 PRINTS HIV Rev interacting protein signature 66 87 IPR001164 GO:0005096
Acco03g0045 323 PRINTS HIV Rev interacting protein signature 26 45 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0045 Acco-ChrAcco03 492118 496698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0045 5 323 C2H2 Transcription Factor Family AT4G05330 68.580 1.87e-170 475