LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco03g0018	ATGGCTCTGCCTCTGATTTTCATCTCTCTACTTCCACTCTCATTGGCTTCTCCTAATTGTCACTCCACTTGTGGGAAACTCACAATCTCTCCTCCCTTCGGAATCAATGACTCCGACTGCTACCATAACAAGTGGTTTGAAATCGAATGCAGACAAGACTCTGCCGGAACTCACAGGCCATATCTCAAGCTCATAAAACTGGAGGTCACAAAATTTGACCACAACTCCTGCAAGGTTTGGGTCAACAACCCCATATACGCATGGAATTGCAAAAACGCCAGAGCAACAAGTGTTGCCATAAATATGAGCACAAGTCCTTTTGCCTACTCTCAGGAGGACAACGTGTTTCTGGGTGTGGGCTGCAACACACAAGCTCTTCTTCTCCAAGGAGACGACGTCGTCTTTGGCGGCTGCGTCTCCATTTGCCACAACAACAATCATTCCGGAATAGGAGCTTGTGTAGGTCACTATTGCTGCGCCACTTCCCTACCTCGGAGTCTGTCGGAATTCAAACCCAGAATTGAACATGTCGCTGGAAACTACAGTAACAGCAGGAATCATGATGATGAAGATTGCAGCTATGCGCTTATTGCTCAAGATAACGGCCTCAACGATTGGGGCTCAAGGATTGTGAGTGAGTTGAAGGATTTGAATAGCGTTGCTGCAGTGCTTGAATATAATAGCAGTTGCAGCCGTGACAACTCTGATATGACGTCTTCCCAGGCCCTCATTAACTCGGCTCTCGGACCTACCGTGTGTTCTTCTCCTTGTGGTTCTACAGGTGGGAGAAGGAACTCCGGATCCAAATCTCAAGGCATGTCGGTGATAGGGGTAGTTTTCTCGAGCCTAGTATCCGTTGTTTTCCTGGTTGGCTTGTGGATTCAGTATAAAATCTTCAGGAGAAGTAGAATAAACAAGCGAAAGGAGAAATACTTTAAGCAAAATGGTGGCCTGCTGTTGCAACGAAGAGATGCGAGCTTCGACAAAACCAAGCTATTCAGCTCGAGGGACCTTGAGAAAGCCACCGACCGCTTCAACGTTAATAGAGTGCTGGGAAAGGGAGGCCAAGGCACTGTTTACAAGGGCATGCTTACCAACGGCCAAATTGTTGCCGTCAAGAAACTCACATTCCAAGGAAATGTAGAGGAATTCATCAACGAAGTGCTCATTCTCTCTCAGATCAACCATAGAAATGTGGTGAGGTTGTTAGGGTTTTGCCTGGAGACACAAGTTCCTCTGCTGGTTTACGAATTCATCCCCAATGGTAACCTCTTCGAGCACTTGCATGAACAAAGTGAAGAGATCTCAATGACGTGGGAGACTCGTTTAAGAATTGCCGGCGAAGTTGCCGGAGCTCTATTTTACTTGCACTCGGCGGCTTCTCGGCCCATTTATCACAGAGATATCAAATCAACCAACATACTGCTGGACGACAAGTTGAGAGCAAAAGTTGCTGATTTTGGAACGTCAAGAATGGTGTCCATGGAAAAGACTCACATCACAACTCAAGTTCAGGGAACTTTTGGGTACTTGGATCCTGAGTATTTTCAGACCAGCCAGTTCACTGACAAGAGTGACGTGTACAGCTTTGGGGTTGTTCTGGTTGAGCTGCTGACAGGTGAAGTTGCAATATCATCGGGAAGGCCATTGGAAGCTCAGGGTTTGGCTCCGTATTTCATAATGCGTATGGATGAAGGTCGTTTATATGATATCGTGGACCAAAGAATCAGGAAGGAGGGGGCGAAAGAAGATATGACACAAGTGGCAAGCCTGGCAAGAAGATGCTTGAGCTTGAATGGGAGGATGAGGCCCAGCATGAGAGAAGTGACAGCGGAATTAGAAGGGATTCAGAGATTGAGAAGGAGGTCAACGTCGAATATAGAGCAGCAGAATTATGAGGACATAGACTTTGGGGGATCCTTCGAAGGCTACCAAACTTGTACTACTGCAGATTATTACTCATCATCTGGATCCACTCTGAACACCATTGCTTCCTCATCGTCCCAGGGCTTGCTTTTTGACGATACCACCTAA	2034	0.4676	MALPLIFISLLPLSLASPNCHSTCGKLTISPPFGINDSDCYHNKWFEIECRQDSAGTHRPYLKLIKLEVTKFDHNSCKVWVNNPIYAWNCKNARATSVAINMSTSPFAYSQEDNVFLGVGCNTQALLLQGDDVVFGGCVSICHNNNHSGIGACVGHYCCATSLPRSLSEFKPRIEHVAGNYSNSRNHDDEDCSYALIAQDNGLNDWGSRIVSELKDLNSVAAVLEYNSSCSRDNSDMTSSQALINSALGPTVCSSPCGSTGGRRNSGSKSQGMSVIGVVFSSLVSVVFLVGLWIQYKIFRRSRINKRKEKYFKQNGGLLLQRRDASFDKTKLFSSRDLEKATDRFNVNRVLGKGGQGTVYKGMLTNGQIVAVKKLTFQGNVEEFINEVLILSQINHRNVVRLLGFCLETQVPLLVYEFIPNGNLFEHLHEQSEEISMTWETRLRIAGEVAGALFYLHSAASRPIYHRDIKSTNILLDDKLRAKVADFGTSRMVSMEKTHITTQVQGTFGYLDPEYFQTSQFTDKSDVYSFGVVLVELLTGEVAISSGRPLEAQGLAPYFIMRMDEGRLYDIVDQRIRKEGAKEDMTQVASLARRCLSLNGRMRPSMREVTAELEGIQRLRRRSTSNIEQQNYEDIDFGGSFEGYQTCTTADYYSSSGSTLNTIASSSSQGLLFDDTT	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco03g0018	677	Gene3D	Phosphorylase Kinase; domain 1	319	418	-	-
	Acco03g0018	677	Gene3D	Transferase(Phosphotransferase) domain 1	419	639	-	-
	Acco03g0018	677	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	319	418	-	-
	Acco03g0018	677	FunFam	Wall-associated receptor kinase 2	419	635	-	-
	Acco03g0018	677	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468
	Acco03g0018	677	CDD	STKc_IRAK	351	616	-	-
	Acco03g0018	677	Pfam	Wall-associated receptor kinase galacturonan-binding	20	82	IPR025287	GO:0030247
	Acco03g0018	677	SUPERFAMILY	Protein kinase-like (PK-like)	328	627	IPR011009	-
	Acco03g0018	677	Pfam	Protein kinase domain	346	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0018	677	SMART	serkin_6	345	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0018	677	ProSiteProfiles	Protein kinase domain profile.	345	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Acco03g0018	677	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	16	623	IPR045274	GO:0007166

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco03g0018	Acco-ChrAcco03	286570	289868	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco03g0018	9	634	Receptor kinase-like Gene Family	AT1G16260	43.759	2.41e-162	482

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Acco03g0018		Pkinase	2e-47	CL0016