Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0011 ATGGCGAAATTCTCGGTTGGTGGGGAGGACGATGGAGGGGGACCCAGCAACCCGACCCAAAAGCGACGCAGAATTGCTGTTAGCCGTGCCACCGTCGGAGATGACGAACGACAAGCCATCGGAAACCCATGCGGAACAGAAGATGAAAGAGAAGATATTGTGCAGGGACTAGAAGTCCTACAAAGTGAAGAAGATCCATGTAACGATAATTCTGGCTATTGCTTTGGAGCTGGGTCAAGCGATAGCGGTGAAGACAATAATGTTTTAGCGCCTGAAAATTGGGACAGGTCCATTTCTGTCATCCTTAGCGACCCTGATGTGTTTGATTGCTGCATCTGCTTTGAACCCTTGAGTATCCCTATCTTCCAGTGTGAGAATGGACATATTGCTTGCTCTTGCTGTTGTGTTAAACTTGGGAACAAGTGTCCCTCTTGCTCTATGCCCATTGGCTATAACCGTTGCCGAGCCATGGAGAAGGTGCTGGAATCTGTTAAGATATCCTGCCTGAATGCACAATATGGTTGTAAAGAAACAATAACTTACAGTAAGAAAAATGACCATGAAAAGCAATGCATTTACGCACCATGTACATGCCCGCAATCAGGTTGCAATTTCGTAGGGCCGTCTAAGGAGTTGCGACTCCACTTTCTCTGTAAACATGGGGTTTCTGCGAGAAATTTTACATATAATTGCTTCTTTTCCATCTTCCTGAGGGTCAATGATGAAGTTATTGTTCTTCAAGAACAGAATGGTGCAGATCTATTCATGCTCAAGAATAAAGTGGGGGATCTGGGGAATATGGTCAATGTGAGTTGCATTTGTCCCAATTCATTCCGAAAGGCATGCCATTATGATATTTTGGCCAGATCCCAGGGATGCTGTCTGAAAATACATTGTTTAGCGGAGAACATTCATGGGGCCAAAGCCAATAATACTGCCCCAACAAGGTTTCTTTTGATCCCATCCTGTTTTTTTGGTTCTTCTGGACAGCTTAAACTGGACATTCGCATCAAGTGTAGTTAA 1023 0.4457 MAKFSVGGEDDGGGPSNPTQKRRRIAVSRATVGDDERQAIGNPCGTEDEREDIVQGLEVLQSEEDPCNDNSGYCFGAGSSDSGEDNNVLAPENWDRSISVILSDPDVFDCCICFEPLSIPIFQCENGHIACSCCCVKLGNKCPSCSMPIGYNRCRAMEKVLESVKISCLNAQYGCKETITYSKKNDHEKQCIYAPCTCPQSGCNFVGPSKELRLHFLCKHGVSARNFTYNCFFSIFLRVNDEVIVLQEQNGADLFMLKNKVGDLGNMVNVSCICPNSFRKACHYDILARSQGCCLKIHCLAENIHGAKANNTAPTRFLLIPSCFFGSSGQLKLDIRIKCS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0011 340 ProSiteProfiles Zinc finger SIAH-type profile. 163 221 IPR013010 GO:0008270
Acco03g0011 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 79 339 IPR044286 -
Acco03g0011 340 MobiDBLite consensus disorder prediction 1 47 - -
Acco03g0011 340 Pfam Seven in absentia protein family 153 226 IPR018121 GO:0005737|GO:0006511|GO:0007275
Acco03g0011 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 216 IPR013083 -
Acco03g0011 340 CDD RING-HC_SIAHs 108 146 - -
Acco03g0011 340 SUPERFAMILY TRAF domain-like 163 337 - -
Acco03g0011 340 ProSiteProfiles Zinc finger SWIM-type profile. 181 229 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0011 Acco-ChrAcco03 231821 234638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco03g0011 106 226 C3H Transcription Factor Family AT2G41980 34.146 1.14e-18 83.6