Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco03g0006 ATGGCATTTTCCATGTGGCAGAATCATGACATAGAGGATTGGGAGAAGGAGATTCAGACTGATCCAAAACTTCAGTGTATAATGCAGCAATTACTCACTCATTCCAACCAAGCAGAAACCGAGGGATATGCCATGATAAAAGGGTGCTTGCATTTTAAGGGCAGACTGGTTCTTCCTAAGAACTCAACCAGAATTCCTGTACTAATGAGGGAATATCATGCCTCTCCGATAGGAGGACACTCCGGATACCTGCGAACTTATAAGAGGTTGGCTAACGTTGTTTATTGGGAACGAATGAAACAGGAGATACAACGATATATGGCTGCATGTGAAATTTGCCAAAGGAACAAGCATCAAGCACTTTCTCCAGTGGGGTTGTTGCAGCCTCTTCCCATCCCTCAAGCCATTTGGGAAGACATAATTATGGATTTTATTACGGGGTTGCCTAAGTCCCGCCGGTTTGACACTATACTAGTAGTTGTGGATCGCCTCACCAAGTATGCCCATTTCCTTCCCCTTCATCACCCTTTTAGTGCCAAAGAGGTAGCTGAACTGTTTACAAAAGAGATCATCCGATTGCATGGTTTCCCCAAGACCATTGTATCGGATCGTGATCGCGTTTTTGTGAGCCATTTTTGGCAGGAGTTGTTTAAACAAGCTGAGACTCAGTTGTGTTTAAGTTCAGCTTATCATCCGGAGACCGATGGACAAACAGAGGTTTTGAACAAGGGCTTGGAGACTTACCTAAGGTGTTTTACTGGTGAACAGCCGCACCAATGGGTTCAGTGGTTGCCATGGGCTGAGTATTGGTACAATACCACTCATCATGGCTCAGCCAACATGACCCCTTTTCGAGCCCTTTATGGGAGGGATCCCCCCACCTTCCTCAAGCTCACCAATGAGCCTTCAGTGGCGGAAGCGGTAAATGAGCAAATAAAATCAAGGAATGCAATTATTGCAACTTTGACGGACAATTTAATCATGGCTCAAGGTGAAATGCAGAAACAAGCAAACAAACACCAAAGAGACCTCCAATTTGAGGTAGGAGATCAGGTTTATGTCAAGATTCGACCCTACCGATTGCGTACTTTGGCTAAGAGGATTAATGAGAAACTCAGCCCGAGATTTTATGGCCCTTTCAAGATTGTAGAACGCATCGGTGCTGTGGCATACCGTCTGGATCTTCCCCCCACAGCCCGGGTACACCCAGTTTTTCACATTTCCGTCCTTAAAAAGTCAGTACAGTCTGCCACTGTGACTCCTACCATCCCACCAGCATTGTCTGAACAATTTGAGCTTCAAGTTCAGCCGTCTGCAGTTTGTAAGGCAAGAACACTGATGAATGGGCAACTGGAAGTACTCATCCAGTGGAAGGACTTACCCTCCTATGAGAATTCTTGGGAAGATGCAGAGACCATTGCACTCCAGTTTCCAGACTTTCACCTTGAGGGCAAGGTGAAGCTTTTAGGGGCAGGAAATGAAAGGGCTCTAGTCAGACAGACCTATGTGTTGTCACAGCCTGAGACTCATCTTGGGAATGGAAATGTCTCAGCTTTATTGTGGAGGTTGTCGGACATTGCTAATGTACACATGTGGGGCTCCAAGTGTGAGATGTTCTTGCTGTCAAACTGTAAACCTTGCTCCAGGGGTATGAATAAGCATTATGGATATGGAGTGGGTTTGGAGTATCAAAATGGAGCTAAAAAAGATGGGGGCTATTCTACAGGAAACCTTGCCTGTCATGATGAACAAGTTAGCAGCCCTGTGAAAACTGTGGAACAAAGCATCAAAAGAAGTCATGGAGGTTCTAGAAGGAGATATATTATTGGCTTGCTCTTGCTAGCGGTCATCAATTCACTGACAATGGGGGGTGATGGGCAAACCATTGTGAGTACTCTGAACTTCATGTTAGCTGTGAGGAGGAGGAGATTTGATTTTGATCCCATGAGGTTTCCAAAGTGTCAACCTCTTCAGGCCATTGTGCAAGTAGGTCCTTTGTCATTATCTGTTCCAGCTTCACCATTTATTCTGGCTCCTTTGCCACTGCTATCTCTTGCTTTTTCATCACTCTTTGCGCCCTTTTCCACCATTGTCATCTGTTTCTGTTTTTCTGCTGCTACTGTTCATTCTATCCTTTCTCTGTTTACTGATATACTTTTGATGGGTTTTGCTTCTGCATCTAAAGATTCTAATCAACTCGCTCATATACATTGTGGAAACTGCCGGACTACACTCATGTATCCATTTGGTGCTCCATCGGTCAAATGTGCAGTTTGTCACTATATTACTAACGTCAGTGCGAGCAATGTAAGGATTCCAATTTCTGTCCACAGACCTAATGGAACAAATGACTCTGGAACATTGTCTTCTACTACAACTAACCAAACTGTCCTGGTTGAAAATCCTATGTCTGTTGATGCAAGTGGGAAACTGGTGAGCAATGTTGTTGTTGGCATTACAGCAGACAAGAAATAA 2475 0.4444 MAFSMWQNHDIEDWEKEIQTDPKLQCIMQQLLTHSNQAETEGYAMIKGCLHFKGRLVLPKNSTRIPVLMREYHASPIGGHSGYLRTYKRLANVVYWERMKQEIQRYMAACEICQRNKHQALSPVGLLQPLPIPQAIWEDIIMDFITGLPKSRRFDTILVVVDRLTKYAHFLPLHHPFSAKEVAELFTKEIIRLHGFPKTIVSDRDRVFVSHFWQELFKQAETQLCLSSAYHPETDGQTEVLNKGLETYLRCFTGEQPHQWVQWLPWAEYWYNTTHHGSANMTPFRALYGRDPPTFLKLTNEPSVAEAVNEQIKSRNAIIATLTDNLIMAQGEMQKQANKHQRDLQFEVGDQVYVKIRPYRLRTLAKRINEKLSPRFYGPFKIVERIGAVAYRLDLPPTARVHPVFHISVLKKSVQSATVTPTIPPALSEQFELQVQPSAVCKARTLMNGQLEVLIQWKDLPSYENSWEDAETIALQFPDFHLEGKVKLLGAGNERALVRQTYVLSQPETHLGNGNVSALLWRLSDIANVHMWGSKCEMFLLSNCKPCSRGMNKHYGYGVGLEYQNGAKKDGGYSTGNLACHDEQVSSPVKTVEQSIKRSHGGSRRRYIIGLLLLAVINSLTMGGDGQTIVSTLNFMLAVRRRRFDFDPMRFPKCQPLQAIVQVGPLSLSVPASPFILAPLPLLSLAFSSLFAPFSTIVICFCFSAATVHSILSLFTDILLMGFASASKDSNQLAHIHCGNCRTTLMYPFGAPSVKCAVCHYITNVSASNVRIPISVHRPNGTNDSGTLSSTTTNQTVLVENPMSVDASGKLVSNVVVGITADKK 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco03g0006 824 Gene3D - 432 481 - -
Acco03g0006 824 Pfam Chromo (CHRromatin Organisation MOdifier) domain 439 478 IPR023780 -
Acco03g0006 824 Gene3D - 127 325 IPR036397 GO:0003676
Acco03g0006 824 ProSiteProfiles Integrase catalytic domain profile. 127 291 IPR001584 GO:0015074
Acco03g0006 824 Pfam Integrase zinc binding domain 65 119 IPR041588 -
Acco03g0006 824 SUPERFAMILY Ribonuclease H-like 129 285 IPR012337 -
Acco03g0006 824 PANTHER YALI0A06105P 39 335 - -
Acco03g0006 824 Pfam LSD1 zinc finger 738 762 IPR005735 -
Acco03g0006 824 Gene3D - 26 117 - -
Acco03g0006 824 SUPERFAMILY Chromo domain-like 400 477 IPR016197 -
Acco03g0006 824 FunFam Retrovirus-related Pol polyprotein from transposon 297-like Protein 128 331 - -
Acco03g0006 824 NCBIfam zinc finger domain, LSD1 subclass 735 764 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco03g0006 Acco-ChrAcco03 179813 187367 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Acco03g0006 Integrase_H2C2 6.1e-16 CL0361