Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3818 ATGAAGCAGCCGGACGGTACCGGAGCTGGGGCTGCCTCAGCAACTGCTCCGCCGAACCCTTGCGAAGGAGCAGAGAAGAAGAGCATAAATCCCGAGCTTTGGCAAGCTTGTGCGGGGCCGCTGGTGAACCTGCCGCCAGCTGGTACTCACGTGGTGTACTTCCCTCAAGGTCATAGTGAACAGGTTGCAGCGTCTTTAAAGAAGGATGTGGACGGTCAGATCCCAAACTATCCAAATCTCCCTTCAAAGTTACTTTGTCTCCTTCACAATGTCACCTTGCATGCTGACCCAGAAACTGATGAGGTATATGCTCAGATGACACTTCAACCAGTGCCTTCCTTTGACAAGGATGCATTACTAAGGTCTGATCTTGCTCTCAAGTCAAGTAAACCACAGCCTGAGTTCTTCTGTAAACAATTGACGGCAAGCGATACAAGTACACATGGAGGGTTTTCTGTCCCACGCCGTGCAGCAGAGAAGATTTTCCCTGCTCTTGATTACTCTATGCAACCTCCTGCTCAAGAACTTGTGGCAAGGGATTTGCATGACAATGTCTGGACATTTCGTCATATATATCGTGGACAACCTAAGCGTCACTTACTTACAACTGGATGGAGTCTATTTGTCAGTGGAAAGAAGCTATTTGCTGGAGACTCTGTTTTGTTTATAAGGGATGAAAAGCAGCAGCTTCTTCTGGGTATCAGGCGAGCTAACAGACAACCCACTAATTTATCATCTTCTGTGCTATCAAGTGATAGTATGCATATTGGAATTCTGGCTGCAGCAGCTCATGCAGCTGCAAACAACAGCCCCTTCACTGTGTTTTATAATCCTAGGGCTAGCCCCTCAGAATTTGTTATTCCTTTAGCAAAGTACTACAAGGCAGTGTATAGCCATCAAATATCACCTGGCATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGTACAATTACGGGGATCTGTGACCTGGATCCTGTGAGATGGAAAAACTCACAATGGCGCAATTTGCAGGTTGGTTGGGATGAATCAACTGCTGGAGAAAGACGAAGTAGGGTTTCAATCTGGGAAATTGAACCAGTGACAGCTCCATTTTTCATCTGCCCACCTCCGTTCTTCAGGTCTAAGCGACCAAGACAACCAGGAATGCCTGATGAAGATTCTTCTGATTTTGACAACCTTTTTAAGCGGACAATGCCTTGGCTTGGTGATGATGTTTGCATGAAGGATCCTCAAGCACTCCCTGGCCTAAGCTTAGTTCAATGGATGAACATGCAGCAAAATCCTGCTCTGTCTAGCTCATTACAGCCAAATTACATGCAATCCTTGTCTGGATCTGTTCTGCAAAACCTTCCTGGTGTAGACATTGCTCGTCAGCTGGGATTTTGTGCTCCACAGATTTCTCAGTCAAGCAATGTAGCCTTCAATCCTCAGAGGTTACTTCAGACCCCACAAGTTGATCATCTTCAGAAGATACCATCTGCGTCTAGCTCATTAGGATCAGTCATGCAGCCACCACAGCAATTGGGTGATATCACTCAGCATCCGAGACAGAATATAGGAAATCAAATTCTACCACAGAGTCAAGTTCAGAGCCAACTTCTGCATGCTCAAAGTATTGTTCAGCCTAACAATATTCTTCAACAGCAGCAACCATCCATCCAAAATCATCAACTGCATGGAAATCTCTCTCAGAACCTGTCACAGCCGCAGCAGCAACAGACAGTAATGGGTCAGAGTCAACAGCAAAATCTTATTCAGTCCTTAATGCCTGATCATGCCAATCAACAGTTGCAGATGTCTGACAACCAGATTCAGCTTCAATTATTACATAAGCTTCAACAGCAACAGCAAACATTCTTGGCACAACAGTCAGTATTGCAGCAGTCTACTCAACTCAGTCAAATCCAAGACCAGCAGAGGCAGCTTTTAGATCCAACTCAGAACTTCTCGAAGGCCCTAACTTCAAGTCAAGTGCTAGAAATTCCTCCAATACTTCAAAACTCACTTCCTGATTCTAATTCTATCCAACCTCAGATGATGAAGAATAATGGCCAGACCAATAATGTTCAGTTCTCTCATCCAACCCAGCAGGCGAAGCTTCAACAGCAGCAGCCTGGTGCATTGTCTGAGATGTCTGGGCATGTGGGACTCCCCCCTGCTCCTACCGCCAACAAACTCTGTGCAGCTGGTAGTAGTATAGTAACTGGAGCAGGGCAGTCTGTAATTACTGATGACATTCCATCTTGTTCCACTTCACCTTCTACTAACAACTGCACCAATACTCTTCCACATATGAATTCCCGGATCCATAGGAACACAATGATAGGGGATGATATGGCTCAATCTGCAGCCACGATCTTAAGTTCAAGTGCCTTGGAGACCATGTCTTCAAATGCTAGCTTGGTTAAGGATTTTCAGCCAAAGTCTGATGTTAAGCCCTCTTTAAATGTATCTAAAAGTCAAAATCAAGGGAATTTTTCTGCTCATGTATACTTAAATGTTGGAGCTGCGCAGACAGATTATTTGGATACATCATCTTCTACAACTTCAGTTAGCCTTTCTCGGAATGACACTTATATGCATCAGAATAACAACCCATTATCTTTTAATCCGCAGTCAATGTTGTTTAGAGACAATAATCAAGATGGGGAAATTCAGCTAGATGCTAGGAGCAATGTTCCATTTGGCAATAATATCGATGGTCTGTTGGGAATGCCGCTAAATCCAGATTCTCTTTTGACCAAAGGCACAATAGGGCTGGGAAAAGATTTGTCAAATAATTTTTCTTCAGGAGGTATGGTTGGTAACTATGAGGATAACAGAGATGCTCAGCAGGAACTTTCTTCATCAATTGTTTCACAGTCATTTGGAGTCCCTGATATGACCTATAATTCAATTGATCCCACAATAAATGATAGTAGTTTCTTAAATAGGGGTACATGGGCCCCACCTCCTCCCCCACCACAATTTCAGAGAATGAGAACATACACAAAGGTGTACAAACGTGGAGCTGTTGGTAGGTCAATAGACATAACCCGGTATTCAGGTTATGAGGAGCTTAAACAGGATTTGGCTCGCAGATTTGGCATAGAGGGACAGTTGGAGGACCGGCAGAGGATAGGCTGGAAACTTGTATATGTAGATCATGAAAATGATGTTTTGCTAGTGGGGGATGACCCGTGGGAGGAGTTTGTGAACTGCGTCCGCTGCATTAAGATACTTTCTCCTCAAGAGGTTCAACAGATGAGTTTGGATGGAGATTTTGGCAACGGTGGCCTGCCAAATCAAGCCTGTAGCAGCTCTGATGGTGGAAATACCTAA 3345 0.4445 MKQPDGTGAGAASATAPPNPCEGAEKKSINPELWQACAGPLVNLPPAGTHVVYFPQGHSEQVAASLKKDVDGQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPALDYSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKKLFAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGICDLDPVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDEDSSDFDNLFKRTMPWLGDDVCMKDPQALPGLSLVQWMNMQQNPALSSSLQPNYMQSLSGSVLQNLPGVDIARQLGFCAPQISQSSNVAFNPQRLLQTPQVDHLQKIPSASSSLGSVMQPPQQLGDITQHPRQNIGNQILPQSQVQSQLLHAQSIVQPNNILQQQQPSIQNHQLHGNLSQNLSQPQQQQTVMGQSQQQNLIQSLMPDHANQQLQMSDNQIQLQLLHKLQQQQQTFLAQQSVLQQSTQLSQIQDQQRQLLDPTQNFSKALTSSQVLEIPPILQNSLPDSNSIQPQMMKNNGQTNNVQFSHPTQQAKLQQQQPGALSEMSGHVGLPPAPTANKLCAAGSSIVTGAGQSVITDDIPSCSTSPSTNNCTNTLPHMNSRIHRNTMIGDDMAQSAATILSSSALETMSSNASLVKDFQPKSDVKPSLNVSKSQNQGNFSAHVYLNVGAAQTDYLDTSSSTTSVSLSRNDTYMHQNNNPLSFNPQSMLFRDNNQDGEIQLDARSNVPFGNNIDGLLGMPLNPDSLLTKGTIGLGKDLSNNFSSGGMVGNYEDNRDAQQELSSSIVSQSFGVPDMTYNSIDPTINDSSFLNRGTWAPPPPPPQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3818 1114 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 1091 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco02g3818 1114 CDD B3_DNA 135 227 IPR003340 GO:0003677
Acco02g3818 1114 SUPERFAMILY DNA-binding pseudobarrel domain 125 265 IPR015300 -
Acco02g3818 1114 SMART B3_2 136 238 IPR003340 GO:0003677
Acco02g3818 1114 MobiDBLite consensus disorder prediction 1094 1114 - -
Acco02g3818 1114 MobiDBLite consensus disorder prediction 689 717 - -
Acco02g3818 1114 Pfam Auxin response factor 262 345 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco02g3818 1114 MobiDBLite consensus disorder prediction 689 719 - -
Acco02g3818 1114 MobiDBLite consensus disorder prediction 1 26 - -
Acco02g3818 1114 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Acco02g3818 1114 Pfam AUX/IAA family 1002 1087 IPR033389 -
Acco02g3818 1114 Gene3D - 300 371 - -
Acco02g3818 1114 ProSiteProfiles PB1 domain profile. 1002 1086 IPR000270 GO:0005515
Acco02g3818 1114 FunFam Auxin response factor 134 238 - -
Acco02g3818 1114 SUPERFAMILY CAD & PB1 domains 1015 1080 - -
Acco02g3818 1114 FunFam Auxin response factor 300 371 - -
Acco02g3818 1114 FunFam Auxin response factor 997 1091 - -
Acco02g3818 1114 Gene3D - 997 1091 - -
Acco02g3818 1114 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Acco02g3818 1114 Gene3D - 134 237 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3818 Acco-ChrAcco02 53691913 53698493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3818 18 483 B3 DNA Binding Superfamily AT1G19220 73.561 0.0 676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco02g3818 B3 1.7e-19 CL0405