Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3791 ATGTCGTCTGATTCTGATGCCCCCTACCCCAATTCGTCATCTTCGACTCCGTTGCAACAGGACGATCCCCAAATGCGAAGGTTGTCTCTGCTTTTCCCACTGCTTCTCGGTTTAGCACCTCCTCGCCTGACCCAGGAATTCGATACTGGTAGCCACCGTGATCGAATCCGGATCATCGTAGTTGACCCTTCAGCTGGAGCCATGATCGTGATCGAAGGCTCTGGAGATCTCCAATCCGTGCTTCAAGGCCTATCGGGGAAGCCTGGCGTGTTGCCGGCGTCAAAGGATTCGATTCAGGCCATGCCCAGAGTGGTGGTGACCGACGAAGGCACGGATTGTTCGATCTGCTTGGAAACTTACGAAGTCGGCGGCGAAGCAAGGGAAATGCCTTGCAAGCATAAATTCCACTCTGGGTGTATTGAGAAGTGGTTAGGGCTTCACGGGTCTTGCCCAATCTGCCGGTATGCCATGCCGAAGGAGGAGGAAAACACTAGTATTACCGTCAGCGAGGGCGAGCACGTTGGCGGCGAGAGGAGGGAGAGCGATGAGGGGTTGGTATCCGTGAGTGTATGGGTGAGGTCCCTGGACGAAGAAGAAGAAGACGAAGATGATGATGATGATCCAATGGAAGTGGATTCAGATCCGGATCATGGATCCGGGGGAGCCAATAACGATTTAAGAGAAGGAAATTCTGCAGGGAATGAAGACTCGTGGATGATGGATCAAGAGGCACAAGACATGGAATTCTGA 750 0.5293 MSSDSDAPYPNSSSSTPLQQDDPQMRRLSLLFPLLLGLAPPRLTQEFDTGSHRDRIRIIVVDPSAGAMIVIEGSGDLQSVLQGLSGKPGVLPASKDSIQAMPRVVVTDEGTDCSICLETYEVGGEAREMPCKHKFHSGCIEKWLGLHGSCPICRYAMPKEEENTSITVSEGEHVGGERRESDEGLVSVSVWVRSLDEEEEDEDDDDDPMEVDSDPDHGSGGANNDLREGNSAGNEDSWMMDQEAQDMEF 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3791 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 160 IPR013083 -
Acco02g3791 249 MobiDBLite consensus disorder prediction 195 212 - -
Acco02g3791 249 FunFam E3 ubiquitin-protein ligase RNF181 82 160 - -
Acco02g3791 249 SUPERFAMILY RING/U-box 107 160 - -
Acco02g3791 249 MobiDBLite consensus disorder prediction 224 238 - -
Acco02g3791 249 Pfam Ring finger domain 112 154 IPR001841 -
Acco02g3791 249 MobiDBLite consensus disorder prediction 1 23 - -
Acco02g3791 249 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Acco02g3791 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 51 158 - -
Acco02g3791 249 SMART ring_2 113 153 IPR001841 -
Acco02g3791 249 MobiDBLite consensus disorder prediction 162 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3791 Acco-ChrAcco02 53367569 53368318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3791 26 193 C3H Transcription Factor Family AT1G26800 42.353 3.87e-38 130