Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3781 ATGGAGATTCCCTCAGGATTAAGAAAAGGCACGTGGTCTAAAGAAGAAGACGATCTTCTAAGAACATGCGTCCAACGTTATGGTGAAGGAAAGTGGCACCTAGTTCCTCAAAGAGCTGCCTTGAATAGATGTCGCAAAAGTTGCAGACTGAGGTGGTCGAACTACTTAAAGCCAGATATCAAGAGAGGAAACTTTTCTGAGGACGAAGCTGATATGATAATGAGGTTCCACAAACTCTTGGGAAACAGATGGACGCTGATTGCTGCGAGGTTTCCTGGAAGAACATCGAATGACGTGAAAAATTACTGGAACAGCCACATACGAAAGAAGCTGCGGTGTCCTTTCACAGAAAATAATAAGGAGAAACAAGAGGCAAGCAGCATCAGAAGGCCCCAAGTAATAAGGCCCCAACCGACAACTTTGTGCAGAAACTACTCGTCAAGGACGAGAAAGGAATTGACTAAAGAAGAAGTTGTTGTTGCAAATACTTATGATAATAGTAGTGGGGGAAGAGACACGCGTATAATAGCGAGTGTTAGTGACAATACGTACGAGAGTGAGAATGGTGGAGCCTTGTTAGTTGCAGATTCAGCAGAGAAGGCTAAAGATCAGTGGTGGCAAAGTTTGCTTGATGACGTCAATAAAGGGAACGAAGAAGACAATTTATGGTGCTTGGGCGGCCAAAAGGAACACAGCGAGTTTCTAGCTCAATTCAGGGACCACGACCATCAACTTGATTTCTTTCAGAGATTTGGTTTCCCTGATTGTCCTTGGGATGAGTAG 783 0.4406 MEIPSGLRKGTWSKEEDDLLRTCVQRYGEGKWHLVPQRAALNRCRKSCRLRWSNYLKPDIKRGNFSEDEADMIMRFHKLLGNRWTLIAARFPGRTSNDVKNYWNSHIRKKLRCPFTENNKEKQEASSIRRPQVIRPQPTTLCRNYSSRTRKELTKEEVVVANTYDNSSGGRDTRIIASVSDNTYESENGGALLVADSAEKAKDQWWQSLLDDVNKGNEEDNLWCLGGQKEHSEFLAQFRDHDHQLDFFQRFGFPDCPWDE 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3781 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Acco02g3781 260 SMART sant 8 58 IPR001005 -
Acco02g3781 260 SMART sant 61 109 IPR001005 -
Acco02g3781 260 FunFam Myb transcription factor 9 61 - -
Acco02g3781 260 Gene3D - 63 133 - -
Acco02g3781 260 CDD SANT 64 107 IPR001005 -
Acco02g3781 260 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Acco02g3781 260 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Acco02g3781 260 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Acco02g3781 260 Gene3D - 9 61 - -
Acco02g3781 260 CDD SANT 11 56 IPR001005 -
Acco02g3781 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 56 IPR017930 -
Acco02g3781 260 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Acco02g3781 260 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 178 - -
Acco02g3781 260 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3781 Acco-ChrAcco02 53275536 53277654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3781 2 211 MYB Transcription Factor Family AT1G66370 46.977 1.35e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Acco02g3781 Myb_DNA-binding 2.9e-14 CL0123