Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3778 ATGGCCAGGAAGAGAAAGAACATCAATACTGTTGAAGAAGCAGGGGAAGATAAGAGTACTGGCAGTGAGGGAAGCATGGGGTGGGAGGAGATGGTGAAGGAGGCTGCCGTACTGGGAGGTCTCCGGCGAGCCCATAAGCGATTCGTGGGGGTCCGGCAGCGCCCTTCAGGGCGATGGGTGGCGGAGATAAAAGACACCATACAGAAGATAAGAGTGTGGCTTGGCACTTTTGACACTGCAGTAGAAGCAGCCAGAGCCTATGATGAAGCTGCTTGCTTGCTTAGAGGAGCCAACACCCGAACAAATTTCTGGCCTTGTCAATCTCAATCCAATTCTTCAAACCCTGCTCTTTCTTCAAAAATCACCAATCTTCTCCTTCAAAGACTCCAAGAAAGAAACAACCAAAACCAAAAATTGTTACCCTCTTCCTCTTCCTCCTCTGTTTCTGCCCTGCTTGTAAGTCAGCAACTGAACCAAGAAGCAGAGGAAAAAACAGAGGTTTCAATGGACCAGTTCACTGACTTTCTTAATGATCCTGATGATTACACAACATCAAGCAACAACAGTGAACAAATAGATTACATTACTCGTAGTTTTGAGTCATGTTTGACTGAGAACAACGAGTTTAAGGAAAGAGAAGAGATAATCAGCGATTCAGGTGAGGAAAAAGAGGAAGAAAGCAGCATGGAGGTTGTGATGGGGATGCAGGATTTTGAGTTTCTGGACTGTGTGATGCCATCATCATGGCACAACTATTCGCCATTCGAGATGCCCCGAGAAATGAAGGAGGAGGAAGACGACGAAGAGGGAGAGAGCTATGGTGGTGATGAGCCTTGTATGCTGAGGGCAGCCATGAAAAGGATGAAGTATGAGAGAAAGTTCTCTGCTTCTCTCTATGCCTTCAATGGGATATCAGAATGCTTGAAGTTGAAACTTGGATCCCCAATCTTGAAGGGAAGAACAGTTTCTGAGCAGCTAGCTAGTCTCCAAATGGCATGTTCCAGTAAGAACAGAATTGAGAATAACAACATCAATACCAAAGAAGAAGAAGAAAGCCCACAAGCACCAATTGATATTTCTGAGTCCCCTTCTTCTTCTTCTGGTAATGATGGTGAATTGATTTGGAGTTCAATAGATCTTCCTCCAATTGCTTTGTTAGCTAATTACTGA 1170 0.4479 MARKRKNINTVEEAGEDKSTGSEGSMGWEEMVKEAAVLGGLRRAHKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAVEAARAYDEAACLLRGANTRTNFWPCQSQSNSSNPALSSKITNLLLQRLQERNNQNQKLLPSSSSSSVSALLVSQQLNQEAEEKTEVSMDQFTDFLNDPDDYTTSSNNSEQIDYITRSFESCLTENNEFKEREEIISDSGEEKEEESSMEVVMGMQDFEFLDCVMPSSWHNYSPFEMPREMKEEEDDEEGESYGGDEPCMLRAAMKRMKYERKFSASLYAFNGISECLKLKLGSPILKGRTVSEQLASLQMACSSKNRIENNNINTKEEEESPQAPIDISESPSSSSGNDGELIWSSIDLPPIALLANY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3778 389 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Acco02g3778 389 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Acco02g3778 389 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Acco02g3778 389 MobiDBLite consensus disorder prediction 1 19 - -
Acco02g3778 389 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Acco02g3778 389 MobiDBLite consensus disorder prediction 1 26 - -
Acco02g3778 389 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Acco02g3778 389 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Acco02g3778 389 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Acco02g3778 389 MobiDBLite consensus disorder prediction 357 373 - -
Acco02g3778 389 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Acco02g3778 389 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Acco02g3778 389 MobiDBLite consensus disorder prediction 339 373 - -
Acco02g3778 389 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3778 Acco-ChrAcco02 53237829 53238998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3778 47 125 AP2-EREBP Transcription Factor Family AT5G19790 73.418 9.13e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco02g3778 AP2 1.2e-13 CL0081