Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3725 ATGAAGAGAGAAAGACCAGATGATCACAGCATCGCCATGACTAACTGCTTGATGCTGCTTTCCGAGGCCGCGGCTTCCTTCAACTCCGTCTCCGCCGCGGACCGTGTCTTCATCTGCAAGACCTGTAACCGCCAGTTCTCGTCCTTCCAGGCGCTCGGCGGCCACCGTGCCAGCCACAAGAAGCCGAAGATAATGGCCGGTGAGGATAGTAACAACAGCGACGATCTTCTTCTTCATGCTTCTTCTTTGTCGTCGTCACCGGCTAAACCTAAAACTCATGAGTGCTCAATTTGTGGATTGGAGTTCGCCATAGGTCAGGCTTTGGGCGGTCACATGAGAAGACACAGAGCTCCAACATCTCATTATAATAACAATAGTAAGAATTCCTCCTCCTCCTCGTCGTCAAGCGTAGAGTTTGCTTCAGATGCAAAGAAGAATAAGAAAGAGAAGAGCAAAAGGGTTCTGTTTCTGGACTTGAACTTGACGCCGCTTGAGAACGATTTGGAGATTTTAGGGATAAAAACGTCAACTCCTTTGCTAGTTACACTTTAG 552 0.4855 MKRERPDDHSIAMTNCLMLLSEAAASFNSVSAADRVFICKTCNRQFSSFQALGGHRASHKKPKIMAGEDSNNSDDLLLHASSLSSSPAKPKTHECSICGLEFAIGQALGGHMRRHRAPTSHYNNNSKNSSSSSSSSVEFASDAKKNKKEKSKRVLFLDLNLTPLENDLEILGIKTSTPLLVTL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3725 183 SMART c2h2final6 93 115 IPR013087 -
Acco02g3725 183 SMART c2h2final6 37 59 IPR013087 -
Acco02g3725 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Acco02g3725 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Acco02g3725 183 Pfam C2H2-type zinc finger 36 62 - -
Acco02g3725 183 Pfam C2H2-type zinc finger 93 118 - -
Acco02g3725 183 SUPERFAMILY beta-beta-alpha zinc fingers 35 115 IPR036236 -
Acco02g3725 183 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Acco02g3725 183 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Acco02g3725 183 MobiDBLite consensus disorder prediction 121 140 - -
Acco02g3725 183 PANTHER ZINC FINGER PROTEIN ZAT5 11 166 - -
Acco02g3725 183 Gene3D Classic Zinc Finger 34 115 - -
Acco02g3725 183 MobiDBLite consensus disorder prediction 113 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3725 Acco-ChrAcco02 52637480 52638031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3725 1 167 C2H2 Transcription Factor Family AT2G28710 45.833 3.40e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g3725 zf-C2H2_6 6.2e-10 CL0361