Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3690 ATGCTGAGCAGCAACACATCGGAGCCTGATGGATCTTCCCCAGACTTAGGCGGATATGGCTATTACTCTTTTGGACTATCCATGGGAGTTCTTATTATCTTCTCATTCGTCACCTTCCTCTTGTATGTCTGCACCAGAAGAAGCGCCTTCAATACGTCACAACATTTTACACCAAGCTTTCGCTTGCGCACCATTAATGTCGTCGACGGAGATTCCAACTCTCTCCAACAGTTAGGTGTGGATGAAACTACCCTCAAGACCTATCCGGTGCTGTTATACTCCGAAGTGAAGCGAGATCGGAAGGGCGGTTCTGCTGCGGCGGCTACTACTTGTTCGATATGCTTGGGTGATTTCAGTGACGCTGAGAGATTGAGAGAGTTGCCGGATTGCGGTCACTTGTTTCACCGGAAGTGTATTGATAAGTGGCTTAGGATGAACTCTTCGTGTCCGTTGTGTCGGACCTCGCCGCTTCCGACGCCGGTTTCAACTCCCCTGGCCGAAGTTGCTCCCTTGGCAAGATGA 522 0.5019 MLSSNTSEPDGSSPDLGGYGYYSFGLSMGVLIIFSFVTFLLYVCTRRSAFNTSQHFTPSFRLRTINVVDGDSNSLQQLGVDETTLKTYPVLLYSEVKRDRKGGSAAAATTCSICLGDFSDAERLRELPDCGHLFHRKCIDKWLRMNSSCPLCRTSPLPTPVSTPLAEVAPLAR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3690 173 FunFam E3 ubiquitin-protein ligase ATL6 69 158 - -
Acco02g3690 173 Pfam Ring finger domain 110 153 IPR001841 -
Acco02g3690 173 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Acco02g3690 173 SMART ring_2 111 152 IPR001841 -
Acco02g3690 173 SUPERFAMILY RING/U-box 90 158 - -
Acco02g3690 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 157 IPR013083 -
Acco02g3690 173 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 167 IPR045899 -
Acco02g3690 173 CDD RING-H2_EL5-like 111 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3690 Acco-ChrAcco02 52113416 52113937 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3690 15 172 C3H Transcription Factor Family AT2G35910 47.170 1.99e-40 134