LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g3659	ATGTCAAAAGAGGTGGTGAAAGATGATTACATCACCAATGGATATAAGAGAAATGTATCATTTAATAAAAGGAAGGCGAATATCATGAAAAAAGTAAGTGAACTTAGCCTCCTTTGTGGTGTTGAAGTTGGAGCAATTATTTTCAGTGGTGATCCCTCTAATCCTACACCGGAAGTGTGGCCAGACCATGAAGGTGTCCAGCAACTGATCGAGAGGTGCCACGCTAGGCCTGTCCCGCGAAGGACCTTGACCATAGAGGAATCAATACAGCAAAGGATCAACATGGCAAAAGAACTTTTAATGAGAAAACGGCAAGAAAATCACGTAGAAGAGATTTCCCAACAAATGATCCAATGTTTAGCAGGGAAAGCAGTGCCCAACCCTGCCAATTGGAATGATATGAAGATATTAGTTGAGCAAACTTCGAAGAACAATGCCAACAATAAGTAA	450	0.4111	MSKEVVKDDYITNGYKRNVSFNKRKANIMKKVSELSLLCGVEVGAIIFSGDPSNPTPEVWPDHEGVQQLIERCHARPVPRRTLTIEESIQQRINMAKELLMRKRQENHVEEISQQMIQCLAGKAVPNPANWNDMKILVEQTSKNNANNK	149

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g3659	149	SMART	madsneu2	1	62	IPR002100	GO:0003677\|GO:0046983
	Acco02g3659	149	PANTHER	MADS BOX PROTEIN	10	121	-	-
	Acco02g3659	149	SUPERFAMILY	SRF-like	6	95	IPR036879	GO:0003677\|GO:0046983
	Acco02g3659	149	Coils	Coil	86	106	-	-
	Acco02g3659	149	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	50	IPR002100	GO:0003677\|GO:0046983
	Acco02g3659	149	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Acco02g3659	149	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Acco02g3659	149	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Acco02g3659	149	ProSiteProfiles	MADS-box domain profile.	1	49	IPR002100	GO:0003677\|GO:0046983
	Acco02g3659	149	CDD	MADS	6	61	-	-
	Acco02g3659	149	Gene3D	-	15	118	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g3659	Acco-ChrAcco02	51677245	51677694	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g3659	3	124	Type I MADS-box Gene Family	AT1G65300	39.200	3.07e-21	85.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Acco02g3659		SRF-TF	2.3e-15	No_clan