Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3656 ATGTCCACCCTTACAGGATTTGTTGATACGAAGGAAGGCCAATATCATGAAAGGAAGGCCAATATCATGAAAAAAGTAAGTGAACTCAGCAACCTTTGTGGTGTTGATGCCGGAGCAATTATTTTCAGTGGTGATCCCTCTGATCCTACACCAGAAGTGTGGCCGGACCATGAAGGCGTCCAGCAACTGATCGAGAGGTGCCATGCTAGGCCTGTCCCACAAAGGACCTTGACCTTAGAGGAATCAATACAGCAAAGGATCAACATAGGAAAAGAACTTCTAATGAGAAAACGGCATGAAAATAATGTAGAAGAGATTTCCCAACAAATGATCCAATGTTTAGCAGGGAAAGCAGTGCCCAACCCTACCAATTGGAATGATATGAAGATGTTAGTTGAGCAAACTTCGAAGAACAATGCCAACAATAAGTAA 432 0.4282 MSTLTGFVDTKEGQYHERKANIMKKVSELSNLCGVDAGAIIFSGDPSDPTPEVWPDHEGVQQLIERCHARPVPQRTLTLEESIQQRINIGKELLMRKRHENNVEEISQQMIQCLAGKAVPNPTNWNDMKMLVEQTSKNNANNK 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3656 143 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 43 IPR002100 GO:0003677|GO:0046983
Acco02g3656 143 Gene3D - 10 89 IPR036879 GO:0003677|GO:0046983
Acco02g3656 143 ProSiteProfiles MADS-box domain profile. 10 43 IPR002100 GO:0003677|GO:0046983
Acco02g3656 143 SUPERFAMILY SRF-like 12 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3656 Acco-ChrAcco02 51622007 51622438 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3656 10 118 Type I MADS-box Gene Family AT1G65300 35.714 8.99e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco02g3656 SRF-TF 1.3e-08 No_clan