Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3654 ATGTCCAAAGAGGTTGTGAAAGATGATTACATCACCGATGAATACAAAAGAAATGCATCATTCATTACAAGGAAGGCCAATATCATGAAAAAAGTAAGTGAACTTGGCATCCTTTGCGGTGTTGAGGCTGGGGCAATAATTTTCCACGGTGACCCCTCTGATCCTACACCAGAGGTTTGGCCGGACCATGAAGGTGTCCGGCAACTGATTGAGAGGTGCCATGCTAGGACTGTCCCGGGAAGGACCTTGGCCATAGAGGAATCAACACGACAAAGGATCAACACGGCAAAAGAACTTCTAATGAGAAAACGGCAAGAAAATCATGTAGAAGAGATTTCCCAACAAATGATCCAATGTTTAGCAGGGAACGCAATGCCCAACCCTACAAATTGGAATGATATGAAGATGTTAGTTGAGCAGACTTTGAAGAACAATGCCAACATTAAGTAA 450 0.4333 MSKEVVKDDYITDEYKRNASFITRKANIMKKVSELGILCGVEAGAIIFHGDPSDPTPEVWPDHEGVRQLIERCHARTVPGRTLAIEESTRQRINTAKELLMRKRQENHVEEISQQMIQCLAGNAMPNPTNWNDMKMLVEQTLKNNANIK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3654 149 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Acco02g3654 149 SUPERFAMILY SRF-like 6 94 IPR036879 GO:0003677|GO:0046983
Acco02g3654 149 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Acco02g3654 149 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Acco02g3654 149 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3654 Acco-ChrAcco02 51563851 51564300 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3654 1 144 Type I MADS-box Gene Family AT5G48670 38.158 1.07e-21 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco02g3654 SRF-TF 1.2e-11 No_clan