Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3642 ATGGACGTACTATCGATTTCGCCTGCGTTAAATGAACCCATGGCCTTTTCCATTCTCAAACCTCACAGAATCCAACTTCGCCACCTTCCCTTAAATCCCAGATTGTGCAATTCATCAAATTACACAACCCATTTCACGCTTTCTTCTTCTTCTTCTCCCTATTTCTGTTTTAGAATAGCGGCAACTTCAGTAACTTCTTTCACTCCCTTAGCTTCTTCCTCCACTGAGAATCGCCATTGGATGGTAATAATGGAAAAGCCTCCACTAGGGGTTGATTCCAAGCAGCAAGTCATTGATTATTATGTTCAAACTCTGCAAAGAGTCATTGGCAGTGAGAAAGAGGTTCAAATGTGTATTTACGATGCTTCGTGGGATACTCACTACGGTTTTTGTTGTGACATCGATGAAGTAACTTCTTCCCAGCTCGCTCGTTTACCTGGGGTCATTTCAGTTAAGCCTGATCCAGATTTCAGCTCTCCAGAAAAGGATTATAGGTCATCAAATGGGCATGGAGATAATTTGTCAATGCTACAAACTGGAGCCACTTTGTTGTTCCCTGCTGGAAATTCAAAGCATTGGCTTGTTCGAATGGATAAACCAGGGGTTGAGGTTGTTACAAAAGCCCAAGTTGTGGATTTTTATGCTCAAATTCTAACCAAAGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATACCATGTTTCTTGGAAAAACAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACGAGAGTTAGCTGGCGTCCCTGGTGTCTTATCAGTACAGCCAGATAATAATTTTGAGTCAGAAATTAAAGATTATGCAGGTGTAAACTTAGGAAACAGTTTGAATGCGCTGAAATCTGAAGCAAGTGAGGCAACGCCTATGAAAACAAAAAAGCTTTTTGTGACAGGCCTATCATTCTATACATCTGAGAAAACTTTACGTGCTGCATTTGAAGGCTTTGGTGAGATTGTTGAAGTGAAAGTTATTATGGATAAAATTTCTAAGAGGTCCAAGGGCTATGCATTTGTGGAATACACAACAGAGGAGGCTGCAGCTGCAGCATTGAAGGAGATGAATGGAAAGATTATCAATGGCTGGATGATAGTTGTGGATGTTGCCAAGCCTAGCCCGCCAAAATTTAATCGGAATCGTGCCAGACCTGTAGCTTGA 1185 0.4127 MDVLSISPALNEPMAFSILKPHRIQLRHLPLNPRLCNSSNYTTHFTLSSSSSPYFCFRIAATSVTSFTPLASSSTENRHWMVIMEKPPLGVDSKQQVIDYYVQTLQRVIGSEKEVQMCIYDASWDTHYGFCCDIDEVTSSQLARLPGVISVKPDPDFSSPEKDYRSSNGHGDNLSMLQTGATLLFPAGNSKHWLVRMDKPGVEVVTKAQVVDFYAQILTKVMGNEKDAQMCIYHVSWKNNFGFCCELDEDCARELAGVPGVLSVQPDNNFESEIKDYAGVNLGNSLNALKSEASEATPMKTKKLFVTGLSFYTSEKTLRAAFEGFGEIVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKEMNGKIINGWMIVVDVAKPSPPKFNRNRARPVA 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3642 394 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 182 371 IPR039206 GO:0016554
Acco02g3642 394 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 62 158 IPR037045 -
Acco02g3642 394 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 186 271 IPR037045 -
Acco02g3642 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 370 IPR000504 GO:0003723
Acco02g3642 394 SUPERFAMILY RNA-binding domain, RBD 294 389 IPR035979 GO:0003676
Acco02g3642 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
Acco02g3642 394 Gene3D - 284 393 IPR012677 -
Acco02g3642 394 FunFam Organelle RRM domain-containing protein 1, chloroplastic 181 270 - -
Acco02g3642 394 SMART rrm1_1 303 376 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3642 Acco-ChrAcco02 51412864 51416298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3642 302 393 C2H2 Transcription Factor Family AT2G19380 37.234 8.21e-13 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g3642 02 51412864 51416298 Acco02g3642 02 51412864 51416298 ECH