Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3625 ATGACATCTATTGGGGCAAAACTGTTCGACAAAAGTCCTCTAAGAGAAATCCCACTTTTAGAAGGTCGAATGCTCAAGAATGATTTCGGGGACATGTGCAATAAGCACTGTGGATTTCAAACAGAGGCAGGAAAATCGGCTGATGCGAGGATTATGAGGTTGTTGGAATTCTTTAGGCATCTGTATTACCGAAGATCAGAGACGTTTCAGAAGATTGTTCCTTCTGGGCTTCAAGAAGAATTTGTTGAACTGTTCGACAAGATCGAAGCTTTGTTCTCTGGGATCAAATCGAAGAACAAGAAGGAGAACACGATTCAGAGAAGCTTGAGCTTGGGTCAACGGTCACTTGCTGCTGGCGGTTCAGATTTGAGGTTGGACCGTTTTAAGGTTAGAACCGTTCGTGTAGATAATGACAACTTTGGAGACAAAGGTGGTAATACTACTAACGGTGGTAAGGATTTTTTCGTGCAATTGGAATTGGTTGTCCGATTTCTTTCTTTTTTCGATTTTGAATTTGGAGCGTTCGAGTGGGAAGTTTTGGCCGTTATGATGATATCTACCGTTGTTAACTTGGTGATGACTGCGATTGCATTTGTGATGAGCACTATGTTCATCGTTTTCGTTTGCACTAGACTCATCTGTGCTCGAATTCAATCAAATGCTTCTCGCCGATCCCTCCTTGTTGCATCCAGATCCAATCTCAGTATGCTGGAGCGGGGATCTCAGGGTCTTGAATCCAAAGCAGTAGTGAACTTTCCGACGAAGAAGTACCGTGATGGATGCTTTGCTGCTGCAGAAAATTCTCAATGCACAATTTGTCTTTCGGAATACCAAGGTGAGGATGTACTGCGCATCCTCCCGTATTGTGGACACTTCTTCCATGCAACCTGCATAGACCTATGGCTGCAGCAACATCTGACATGCCCGGTTTGTCGAATCTCATTAAGCAAATCATCAAGGGAGAGAAATCACGTAATGCGGCCAATGTTCAGTGGTGTTGTTCAATCTAATTTCGGCATGGAATCTATTGATCACTACATGATGATGGCTAATAATGAGTTATCATCAAGAAACCCTGACATACAAGGGCATCATTATGCCGCAGCTGAAGGTCATGAAATGGTTGCTTTAGACAATGTCACCAATTTAAGTGATGCTGATCAGTCCATGAAAGATGCAGGAAAGAAGCATTTAGAGAGCCCATCAATCACCCCATTGAGCTAA 1224 0.4314 MTSIGAKLFDKSPLREIPLLEGRMLKNDFGDMCNKHCGFQTEAGKSADARIMRLLEFFRHLYYRRSETFQKIVPSGLQEEFVELFDKIEALFSGIKSKNKKENTIQRSLSLGQRSLAAGGSDLRLDRFKVRTVRVDNDNFGDKGGNTTNGGKDFFVQLELVVRFLSFFDFEFGAFEWEVLAVMMISTVVNLVMTAIAFVMSTMFIVFVCTRLICARIQSNASRRSLLVASRSNLSMLERGSQGLESKAVVNFPTKKYRDGCFAAAENSQCTICLSEYQGEDVLRILPYCGHFFHATCIDLWLQQHLTCPVCRISLSKSSRERNHVMRPMFSGVVQSNFGMESIDHYMMMANNELSSRNPDIQGHHYAAAEGHEMVALDNVTNLSDADQSMKDAGKKHLESPSITPLS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3625 407 PANTHER OS11G0150450 PROTEIN 184 358 - -
Acco02g3625 407 CDD RING-H2_EL5-like 269 312 - -
Acco02g3625 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 318 IPR013083 -
Acco02g3625 407 Pfam Ring finger domain 269 312 IPR001841 -
Acco02g3625 407 SUPERFAMILY RING/U-box 264 318 - -
Acco02g3625 407 MobiDBLite consensus disorder prediction 388 407 - -
Acco02g3625 407 ProSiteProfiles Zinc finger RING-type profile. 270 312 IPR001841 -
Acco02g3625 407 SMART ring_2 270 311 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3625 Acco-ChrAcco02 51144924 51148811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3625 195 342 C3H Transcription Factor Family AT4G10150 34.395 9.90e-20 85.9