Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3577 ATGGAACCACAAGAAGAAGTCATCTCTTTGGGGGCTAAAGACCAAACCCATCAGATTATCAAGGGCAAAAGAACCAAAAGGGTAAGGCCACAATCTCCGTTACCCATCTCCGCCACTGCCACCGTCGCCAAAACCGAAGAGTTATATCAATTTCTGGGTGAGGATGATAATACCAAATACTCTGCCGCCACAACAACAACTTCTTCTGCAGAATTTGAAGAAAATAGCAACATTAATAATTACAGCAGCAGCACAGAGGAAGAGGAAGACATGGCCAATTGCTTGATTCTTCTGGCTCAAGGCCAATCTCGGTTTTCTCCGAAACCAGCCAAGGAAGAAGGTAACATGATGAGGATAACAATGAAGTCTAACAACAACAACAATCATAACTATAACAGCAGCAGCAGCAGGAGATTCATGGAAGCATCCACCATGGGAGCTAACAGATCAGGTTTCTATGTCTATGAATGTAAGACCTGCAATAGAACGTTCCCTTCTTTCCAAGCTTTAGGAGGCCACAGAGCAAGCCATAAGAAGCTTAAGAACTTACCTGCGATTTCTGCCATTTTAGACAAAGAGAAGAAAAAAGATCAAGACTTTATCATCCGCAGTCCTACCCCACTTTCTTTTCAGTTTCTGAACAGTGGCAGCAATCTTAACAACAAGAATAAGGTTCATGAGTGTTCTATTTGCGGGGCTGAATTTGCTTCAGGTCAGGCCTTGGGTGGCCACATGAGAAGGCACAGAGCACCCAATGGAACAACCGCCACAACTGCGAACAATGCCACATTCTTGGCACTTAACAACAATCGAGTGGTTTTGGGTTTGGAAGCTGATCAATATGACCATGAAGATCATCATCACCACCCGAGAAAGAAAAGGAACATTTTGTCCTTGGATTTAGATCTTAATCTTCCTGCCCCAGAAGATGATCATCAGAGTGAGTCATCATCTTTTGCATTTGAACCCAAGAATCAACAGCAGCAACAAGCAAGTCTCGTTTTTTCTTCTGCACCTGCTTTGGTGGATTGTCATTACTGA 1041 0.4342 MEPQEEVISLGAKDQTHQIIKGKRTKRVRPQSPLPISATATVAKTEELYQFLGEDDNTKYSAATTTTSSAEFEENSNINNYSSSTEEEEDMANCLILLAQGQSRFSPKPAKEEGNMMRITMKSNNNNNHNYNSSSSRRFMEASTMGANRSGFYVYECKTCNRTFPSFQALGGHRASHKKLKNLPAISAILDKEKKKDQDFIIRSPTPLSFQFLNSGSNLNNKNKVHECSICGAEFASGQALGGHMRRHRAPNGTTATTANNATFLALNNNRVVLGLEADQYDHEDHHHHPRKKRNILSLDLDLNLPAPEDDHQSESSSFAFEPKNQQQQQASLVFSSAPALVDCHY 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3577 346 ProSitePatterns Zinc finger C2H2 type domain signature. 228 248 IPR013087 -
Acco02g3577 346 SMART c2h2final6 226 248 IPR013087 -
Acco02g3577 346 SMART c2h2final6 155 177 IPR013087 -
Acco02g3577 346 MobiDBLite consensus disorder prediction 65 85 - -
Acco02g3577 346 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Acco02g3577 346 Gene3D Classic Zinc Finger 152 248 - -
Acco02g3577 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 253 IPR013087 -
Acco02g3577 346 PANTHER ZINC FINGER PROTEIN ZAT5 75 327 - -
Acco02g3577 346 MobiDBLite consensus disorder prediction 310 325 - -
Acco02g3577 346 SUPERFAMILY beta-beta-alpha zinc fingers 154 248 IPR036236 -
Acco02g3577 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Acco02g3577 346 MobiDBLite consensus disorder prediction 304 325 - -
Acco02g3577 346 Pfam C2H2-type zinc finger 225 251 - -
Acco02g3577 346 Pfam C2H2-type zinc finger 154 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3577 Acco-ChrAcco02 50492074 50493114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3577 19 346 C2H2 Transcription Factor Family AT5G04390 44.414 8.16e-74 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g3577 zf-C2H2_6 9.5e-13 CL0361