LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Acco02g3536	ATGATCATGTGCGAGCCTAAAACGAGCTCGAAGAAATTGTTGGCGATATTCATTTGGTTAGGTATTGTGGCGGCGCCTTTGAGCTTCTTCAATGTGATAAATTGCCAACAAGTCGTCGTCGTCGTCGATGACTACGACCAGCAAATCCACAATCCAGCCGTTCTTCCCCTCGTTACGCAGCTTGTGTACTCTCGAATTTCAAATCTCACCTCCCTTCTCAGTCAAGAAATCGGCCATCGTTCCAGTTTCTGCGTCAAAGATCCGGAAACTGAGTGGAACCAAGCATTTAACTTCTCTTCAAATTTGGACTTCTTGAGTTCTTGCATTCAAAAAACCAAAGGTGATGTCACAAAACGCTTGTGTACAGCCGCAGAGATGAGGTTTTACTTCAACAGTTTTTTTGAAAGTCCAAGAAGTGCCAATTTCTTAAAGCCTAACAAGAACTGCAATTTAACCTCATGGGTTTCTGGTTGTGAGCCAGGATGGGCCTGTAGTGTTGGTTCACAACAGCAGGTTGACCTTCAGAATTCAAAGGAGATACCTGCAAGAACTACAAGTTGTCAGGCATGCTGTGAGGGCTTTTTTTGTCCTCAGGGCCTCACTTGCATGATACCTTGCCCGCTAGGTTCCTATTGCCCTCTTGCAAGACTCAATGAAACAACTGGTGTATGTGAACCATATATTTACCAGTTGCCTCCAAATCAACCAAACCATACCTGCGGAGGAGCAAATATTTGGGCTGATTTTAGTAGCAGTATTGAGATGTTTTGTTCGGCTGGATCATACTGTCCAACAACCACCAAAAGAGTCCCTTGCAGTAGTGGGCATTATTGCAGGACGGGCTCTACATCTGAGAAAAGATGCTTCAAGTTGAGTTCATGTAATTCAAAAACAGCAACCCAAAACCTGCATGCATATGGAATTATGCTCATTGCCGCTTTGAGTACTTTGCTACTCATTATTTACAACTTTTCTGATCAAGTTCTCGCAATTAGGGAGAGGCGAGTGGCTGAATCCAGAGAAGCAGCAGCTAGAAGTGCAAGGAAGACTGCAAATGCACGCCAAAGATGGCAATTTGCAAAAGATGCTGCTAAGAAGCATGCAAGTGGGCTGCAAGCTCAACTATCACGCACATTTTCTCGTAATAAGAAGTTAGCATCACATTCAGGAAAACTTCAAATTTCGGATCAGGAAGCTTCAGAAACAAATATTGAATTTTTGCCAGCGGATTCGATCCCTTCATGCCCTGTTCCTTCATCTGCAGGGCCAAATGAAATAAGAAAAGAACCCACGAAACTCAGGCAGATGATAGAAAATGACCAAGACAGTGATGAAAACTTCACTGTAGGAAGTGAAGAAAGAAGTTTAAAGCAGAAAATGCCCAAGGAGAAACAATTGAATACTCATACCCAGATTTTTAGGTACGCTTATACTCAACTTGAGAAAGAGAAGGCACAGCAACAAGAAAACAAGAATCTTACCTTCTCAGGGGTGATTAGAATGGCTATCAACCCTGAGCAGAGAAAAAGGCCATTAATTGAGATTTCTTTCAAAGATCTCACTCTCACTTTGAAATCAAAAAGAAAGCATATATTGAGATGTGTTACAGGTAAAATTAAACCTGGATGCATTACTACTGTCATGGGTCCTTCAGGTGCAGGTAAGACAACATTTCTTTCAGCTCTAGCCGGGAAAGCACATGGATGTACGGCAACTGGTTTAATTCTTATAAATGGAAAGAATGAATCTATCCACTCCTACAAGAAAATGATTGGCTTTGTGCCACAAGATGATATAGTTCATGGAAACCTTACAGTGGAAGAGAACCTTTGGTTCAGTGCACAGTGCAGGTTATCCTCTAACTTGTCAAAACCAGAGAAAGTTCTAGTTGTTGAAAGAGTTATTGAATTCCTGGGACTTCAGTCAGTGAGAAATTCCTTCGTTGGTACTGTGGAAAAGCGAGGAATCTCTGGAGGCCAAAGGAAACGTGTAAATGTTGGGTTGGAGATGGTCATGGAACCTTCACTTTTGATCTTAGATGAACCCACATCTGGTTTGGACAGTGCATCGTCTCAACACCTTCTTAGAGCACTTAGACGTGAAGCTCTTGAGGGGGTGAATATTTGCATGGTCGTGCACCAACCCAGCTATGCCTTGTTCAAGATGTTTGATGATTTAATTCTTCTGGCAAAAGGTGGTCTTACTGTCTATCATGGATCAGTCAAGAAGGTTGAAGGGTACTTTGCGAGTCTCGGGATCAATATCCCAGAACGGATCAATCCTCCAGACCGCTTCATTGACATTCTGGAGGGTATAGCTGTACCTGGTGGAAGCTCAGGTGTGAGCTATAAAGAGCTTCCTATTAGATGGATGCTTTATAATAACTATCCAATACCTTCTGATATGCAGCAGATAAGTGTATCTAACTTTGTTGTATCACCTCAAAGTGTGAACACAGCTAATGAACAAACCTTTGCTGGAGAATTATGGCAAGATGTTAAACACAGTGTGGAATTGCAGAGCGAGAAGATTAGACTTAATTATTATTCAAAGTCCAAGGAATTATCTAACAGGAAAACTCCTGGCGTGTTTAAGCAATATAAGTACTTTCTAATAAGGGTTGGTAAGCAGAGACTAAGGGAAGCTAGTATTCAAGCTATAGATTATCTGATTTTATTACTAGCCGGAGCTTGCTTAGGATTGCTCACTAAAGCAAGTGAACAAACTTTTGGTGCAGCTGGCTACACATACACTATCATTGCTGTCTCTCTTCTATGCAAAATAGCAGCCTTGAGATCCTTTTCTCTGGACAAAATACAATACTGGAGGGAGAGAGATGCGGGCATGAGCAGCTTGGCTTATTTTCTGTCCAAGGACACAATTGATCATTTTAATACAGTGATCAAGCCTTTGGTCTACCTCTCCATGTTCTATTTCCTCACCAATCCAAGATCTTCTTTTACAGATAACTATATTGTGCTTCTCTGTCTCGTATACTGTGTCACTGGCATAGCTTATGCACTGGCCATGCTCTTTGAGCCTGGTGCTGCCCAGCTTTGGTCAGTACTTCTTCCAGTTGTTTTGACTCTTATTGCAACAAAACAAAAGGATAGTAACTTTCTGAATGGTATAGCTAATGTTTGCTATTCTAAGTGGGCTCTGCAAGCATTTGTTATTGCAAATGCTGAGAGGTATCATGGAGTATGGCTCATAACTCGATGTGGATCACTTAAGGAAAGTGGCTATAATCTTCGTGATTGGAATTTGTGCATATTAATCCTCCTTTGTATAGGCATGATCAGTCGAGTTCTGGCTTTCATCCGTATGGTCACTTTTCAAAACAAGTGA	3348	0.4167	MIMCEPKTSSKKLLAIFIWLGIVAAPLSFFNVINCQQVVVVVDDYDQQIHNPAVLPLVTQLVYSRISNLTSLLSQEIGHRSSFCVKDPETEWNQAFNFSSNLDFLSSCIQKTKGDVTKRLCTAAEMRFYFNSFFESPRSANFLKPNKNCNLTSWVSGCEPGWACSVGSQQQVDLQNSKEIPARTTSCQACCEGFFCPQGLTCMIPCPLGSYCPLARLNETTGVCEPYIYQLPPNQPNHTCGGANIWADFSSSIEMFCSAGSYCPTTTKRVPCSSGHYCRTGSTSEKRCFKLSSCNSKTATQNLHAYGIMLIAALSTLLLIIYNFSDQVLAIRERRVAESREAAARSARKTANARQRWQFAKDAAKKHASGLQAQLSRTFSRNKKLASHSGKLQISDQEASETNIEFLPADSIPSCPVPSSAGPNEIRKEPTKLRQMIENDQDSDENFTVGSEERSLKQKMPKEKQLNTHTQIFRYAYTQLEKEKAQQQENKNLTFSGVIRMAINPEQRKRPLIEISFKDLTLTLKSKRKHILRCVTGKIKPGCITTVMGPSGAGKTTFLSALAGKAHGCTATGLILINGKNESIHSYKKMIGFVPQDDIVHGNLTVEENLWFSAQCRLSSNLSKPEKVLVVERVIEFLGLQSVRNSFVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSASSQHLLRALRREALEGVNICMVVHQPSYALFKMFDDLILLAKGGLTVYHGSVKKVEGYFASLGINIPERINPPDRFIDILEGIAVPGGSSGVSYKELPIRWMLYNNYPIPSDMQQISVSNFVVSPQSVNTANEQTFAGELWQDVKHSVELQSEKIRLNYYSKSKELSNRKTPGVFKQYKYFLIRVGKQRLREASIQAIDYLILLLAGACLGLLTKASEQTFGAAGYTYTIIAVSLLCKIAALRSFSLDKIQYWRERDAGMSSLAYFLSKDTIDHFNTVIKPLVYLSMFYFLTNPRSSFTDNYIVLLCLVYCVTGIAYALAMLFEPGAAQLWSVLLPVVLTLIATKQKDSNFLNGIANVCYSKWALQAFVIANAERYHGVWLITRCGSLKESGYNLRDWNLCILILLCIGMISRVLAFIRMVTFQNK	1115

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Acco02g3536	1115	SMART	AAA_5	541	733	IPR003593	GO:0016887
	Acco02g3536	1115	Pfam	ABC transporter	534	684	IPR003439	GO:0005524
	Acco02g3536	1115	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	514	737	IPR027417	-
	Acco02g3536	1115	CDD	ABCG_EPDR	513	739	-	-
	Acco02g3536	1115	PANTHER	ABC TRANSPORTER G FAMILY MEMBER 28	260	1103	-	-
	Acco02g3536	1115	MobiDBLite	consensus disorder prediction	442	464	-	-
	Acco02g3536	1115	ProSitePatterns	ABC transporters family signature.	656	670	IPR017871	GO:0005524\|GO:0016887
	Acco02g3536	1115	Gene3D	-	504	757	IPR027417	-
	Acco02g3536	1115	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	515	757	IPR003439	GO:0005524
	Acco02g3536	1115	Pfam	ABC-2 type transporter	713	1115	IPR043926	GO:0140359
	Acco02g3536	1115	FunFam	ABC transporter G family member 24	509	751	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Acco02g3536	Acco-ChrAcco02	49726382	49737950	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Acco02g3536	514	716	Calmodulin-binding Proteins	AT2G36910	25.837	6.29e-13	71.6