Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3533 ATGGGAAATGTTGAAATTCCCAATTGGCTAAAAGACTTGCCATTGGCTCCGGAATTTCGCCCAACTGATACCGAATTCGCCGACCCAATTGCTTACATTTCAAAGATTGAGAAAGAAGCTAGCGCTTTTGGTATATGTAAGATTATCCCTCCATTACCCAAGCCTTCTAAAAGATATGTCTTCTCTAATTTAAACAAGTCTCTTTTGAAGAGCCCTGAATTGGCTTCAGATAGTAATTCGGTTGGAGTTAGTAATTATTTGAAAATTATTTCTGGCGATGGGGGTAGTGATGGGGAGGCTCGGGCTGTGTTTACCACAAGGCATCAAGAATTGGGGCAGGGTATCAAAAGAACCAAAGGAACAATTCAAAGCCCACTTTCAGGCGTTCATAAACAAGTATGGCAGAGTGGGGAAGTTTATACACTTGAACAGTTTGAGTCTAAATCAAAGGCTTTTGCAAGAAGTGTACTGGGTATGGTTAAGGAGGTTTCTCCACTGGTTATAGAGGCAATGTTTTGGAAGGCAGCTTCAGAGAAACCTATATATGTGGAGTATGCCAATGATATGCCTGGTTCTGCTTTTGGGGAATCCAAGGGTCAATTTCATTATATTCATAGAAGGAGAAGGAAAAAGGCTTATTATCAAAGGAGTCTAGATACCTCAGATTGCCAAGAACCCAAAATGGATGAAATAAAAGATACCCAGACTGGAGAAAGTAAGGATGCCTCTGCCCATAATCATGCAGACTTATGCTTACGGGCATCAAATTCAACTTCAAAACTGTCAACATTTTCATCAAATGAAGCCCCCCTTTCTATCAGGCAGAAGAGCTCAGATTCCAGCGATGAGATGGAGGGTACTGCTGGTTGGAAGCTTTCGAACAGTCCTTGGAACTTACAAGTCATTGCACGTTCACAGGGCTCGCTAACACGTTTCATGCCAGATGATATTCCTGGTGTCACTTCCCCCATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCATGGCATGTAGAGGATCATGAACTTCATAGCATGAATTTTCTTCACATTGGCTCTTCAAAGACTTGGTATGCTGTTCCTGGTGATTATGCCTCTGCTTTCGAGGAACTCATCCGTACTGACGTTTGTGGTGGTGATATTGATCACTTAGCTGCTCTGACTCTGTTGGGCGAGAAGACAACCCTCCTATCACCAGAGGCAGTCATTGCATCTGAGATCCCTTGTTGCAGGTTGACGCAGAACCCTGGAGAATTTGTTGTGACCTTTCCAAGGGCTTATCATGTAGGATTCAGCCATGGCTTTAACTGTGGGGAAGCAGCTAACTTTGGAACTCCACGATGGCTCACAGTAGCCAAGGAAGCTGCTGTGCGTAGGGCTGCAATGAATTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTGTTGACTATGTCTTTTGTTTCAAGGGTGCCAAGAACATTGTTACCAGGTGTGCGGAGTTCCCGTCTGAGAGACCGTCAAAAAGAAGAAAGAGAATTGTTAGTAAAAAGATCTTTTATAGAAGATATGACGCAAGAAAACAAATTGCTATCCATTCTTCTTGGAAAGCAATCAACTTATCATCCTGTTTTATGGAATGCTGATTTACTCCCAGATTCCAGCAAGGATTCTCCTCAGTTGCCTGACTTAACTTCTACAACTAAAACCCCTATGGAAGACATGTCAAATTTGAGTTCTGCTGATAAGAGCAACCACAGTTGTCTGTTTGATGAAATGAGCTTCTATATGGAGAATCTGACTGAATTTTATATTGGTGACGACAGTCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCATGTGTGGGTTGTGGAATTCTTGGTTTTCCATTCATGGCTGTGGTACAACCATCAGAGAGATCAGCAATGGAACTTCAGCCAGTCTCAGGGAATGCTCTTTCTGTTACTGATCGTCCTTCAACAAATGAACCAATGAAACTATCATTAATGAACTGTGACAAGGGTTGGAACACCTCTTGCAAGTTTTTGAGGCCACGAATTTTCTGCCTGGAGCATGCTGTTCAGATTATGGAGATGCTGCATTGTAAAGGTGGAGCTAGTGTACTTGTAATTTGCCATTCAGACTACCAGAAAATCAAGGCACATACCAGGGCAGTAGCGGATGAGATAGGCTGTGCTTTTCATTATAATGAGGTTCCTTTAGAGACTGCATCCCCTGAAGATTTGACCTTGATAGATCTTGCGATTGATGGTGAAGAACACAATCAATGTGAAGAAGACTGGACATCTAAATTAGGAATTAACCTGCGGTACTGTGTCAAGGCAAGAAAGAACTCTGCATATAAACAAGCTCCTTTCAAATTGACACTGGGAATGTTGTTCCCTGAGAAATTTCCTGGTTCAGAGGTCTTGTCTGTAAATTGGCTGTCAAAGAGATTTCGCTCCAGAAGGTTGAAGTATTTGGCTCAGGAGAAAGCATGCCAGAGAAAGAAGGATGATCAATCAGAAGGAGAGACAGTTGGCTCCCCTGCTAAAAAGATGCTTCAGTATTCAAGGAGAAAGTTCAGGTCAAAGCAAGGTTGTTTCTCTGGATCAAACATGGTTCATGTACCCCATGAAGAGTCCATAAATGTGCCAGCTGTCTTGAGTGGAGATTCTGGTATCCAGGCTCCTGAAAATAAGCCTGGCACTGAGAATTCTAAGAGTTTTGTGAAACCTTCAGAATTCACTCTGGAACCTATGTCAGTGGATGAACATGCTGGACCAGAGTTCCAGAATCAAACTACAGTGGAATTAAAGATAGATGGCAAAAGTAGTTGCACAACACCTGATCATTCTACGATGCCCTGTAAGATGGGTGCCTCAGAAATTGGTAATGAGGACAATGAGGTTTTGCATGACAAGATAAATTCTAGCTCGCTTACTGTTGCTAAAGACAAGAATATTAACATGCTTAGTGAGAACTTTATCACTGAAGCAATTAACACCAATTGTAGCAATAGCCTGTATTCCAATAAAGCACATCAAGAATTTGAGCCTACCCACCTGAGTAATAGGTTGGAAGCTACTTCATCTCCTGTTTCATCGGTAACTCAGCAGACACTTGCCTCCACGGAAGAAAATTCTGATAGTGCTAGAAAGGATCGTATGACTGAAAGCATGAGCTATGGTGCATCCTTAAAAAAGACAGCAGACACTTCTTGTATGAATGTAAACAACATGGAACCTACTGTAAGTTGTGATAAATCAATAAATATGCCGATGTCAAAGATTGATGCTCATGAAGTTCCAAAAGAGCTTTGTGCCTCTGCAGACTCCAGCCCTGAATCTACTTCAGATATGAGAAAAGAACTAGAAATCCATCCAAAAAGCATGAATGATGAGGAAATCTGCTCTGGTTCTGGTGCTGTGCCATTGTTAAAGGACTCTTCTGTGACAATTTGGGAGTGTTCTACAACTGAGGGAGAGGAATGTGCAAGAGATAGCTTAAATGGAAGCGAAGTTCTTTCTTTGAATGACTATAGGGAGCTGCCAAGCTCTGAAAGGAAACAGAAGAAAAGAAAGAGGGAATTGGAACAGATACAAGAGGCCAATACAAGTTTCCATGGTTTTGTTAGAAGTCCATGTGAAGGGTTGAGACCAAGGGCTTGCAAAGTAGCCTCTGGCCGAAGCATGGCTGAAACCAGCAATTCTGTGGAGGAAAATCGAGAGGTCAAAAGGGCTAGGAGGACATCATCAGATGTCGTGGTGTCTAGCAAGAATAAGAAGAATGCTGTTAAGAGGTCTCACAAGTGTGACCTTGATGGTTGCCATATGAGTTTTACTACTAAGGCAGATTTGATGTTTCACAAGCGTAATCGTTGTCCTCATGATGGGTGTGGAAAGAAGTTCAGGTCCCACAAATATGCTGTGCTTCACCAGCGTGTCCATGATGATGACAGGCCTCTCAAGTGCCCATGGGAAGGTTGCTCAATGTCATTCAAGTGGGCATGGGCTAGGACCGAGCATATACGGGTGCATACTGGGGAAAAGCCATACCGCTGCAAGGTTGAGGGATGTGGCCTTTCGTTCAGATTTGTATCTGATTATAGCAGGCACAGGCGAAAAACCGGGCACTATGTAAAGTCAGTTGATTGA 4146 0.4274 MGNVEIPNWLKDLPLAPEFRPTDTEFADPIAYISKIEKEASAFGICKIIPPLPKPSKRYVFSNLNKSLLKSPELASDSNSVGVSNYLKIISGDGGSDGEARAVFTTRHQELGQGIKRTKGTIQSPLSGVHKQVWQSGEVYTLEQFESKSKAFARSVLGMVKEVSPLVIEAMFWKAASEKPIYVEYANDMPGSAFGESKGQFHYIHRRRRKKAYYQRSLDTSDCQEPKMDEIKDTQTGESKDASAHNHADLCLRASNSTSKLSTFSSNEAPLSIRQKSSDSSDEMEGTAGWKLSNSPWNLQVIARSQGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHIGSSKTWYAVPGDYASAFEELIRTDVCGGDIDHLAALTLLGEKTTLLSPEAVIASEIPCCRLTQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPRWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRTLLPGVRSSRLRDRQKEERELLVKRSFIEDMTQENKLLSILLGKQSTYHPVLWNADLLPDSSKDSPQLPDLTSTTKTPMEDMSNLSSADKSNHSCLFDEMSFYMENLTEFYIGDDSLPCHFQTDSGALACVGCGILGFPFMAVVQPSERSAMELQPVSGNALSVTDRPSTNEPMKLSLMNCDKGWNTSCKFLRPRIFCLEHAVQIMEMLHCKGGASVLVICHSDYQKIKAHTRAVADEIGCAFHYNEVPLETASPEDLTLIDLAIDGEEHNQCEEDWTSKLGINLRYCVKARKNSAYKQAPFKLTLGMLFPEKFPGSEVLSVNWLSKRFRSRRLKYLAQEKACQRKKDDQSEGETVGSPAKKMLQYSRRKFRSKQGCFSGSNMVHVPHEESINVPAVLSGDSGIQAPENKPGTENSKSFVKPSEFTLEPMSVDEHAGPEFQNQTTVELKIDGKSSCTTPDHSTMPCKMGASEIGNEDNEVLHDKINSSSLTVAKDKNINMLSENFITEAINTNCSNSLYSNKAHQEFEPTHLSNRLEATSSPVSSVTQQTLASTEENSDSARKDRMTESMSYGASLKKTADTSCMNVNNMEPTVSCDKSINMPMSKIDAHEVPKELCASADSSPESTSDMRKELEIHPKSMNDEEICSGSGAVPLLKDSSVTIWECSTTEGEECARDSLNGSEVLSLNDYRELPSSERKQKKRKRELEQIQEANTSFHGFVRSPCEGLRPRACKVASGRSMAETSNSVEENREVKRARRTSSDVVVSSKNKKNAVKRSHKCDLDGCHMSFTTKADLMFHKRNRCPHDGCGKKFRSHKYAVLHQRVHDDDRPLKCPWEGCSMSFKWAWARTEHIRVHTGEKPYRCKVEGCGLSFRFVSDYSRHRRKTGHYVKSVD 1381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3533 1381 ProSitePatterns Zinc finger C2H2 type domain signature. 1321 1343 IPR013087 -
Acco02g3533 1381 SUPERFAMILY Clavaminate synthase-like 261 457 - -
Acco02g3533 1381 MobiDBLite consensus disorder prediction 1021 1054 - -
Acco02g3533 1381 SMART cupin_9 291 460 IPR003347 -
Acco02g3533 1381 MobiDBLite consensus disorder prediction 552 576 - -
Acco02g3533 1381 FunFam Probable lysine-specific demethylase ELF6 1316 1345 - -
Acco02g3533 1381 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Acco02g3533 1381 MobiDBLite consensus disorder prediction 1021 1043 - -
Acco02g3533 1381 MobiDBLite consensus disorder prediction 831 850 - -
Acco02g3533 1381 SMART c2h2final6 1319 1343 IPR013087 -
Acco02g3533 1381 SMART c2h2final6 1266 1288 IPR013087 -
Acco02g3533 1381 SMART c2h2final6 1349 1375 IPR013087 -
Acco02g3533 1381 SMART c2h2final6 1289 1313 IPR013087 -
Acco02g3533 1381 MobiDBLite consensus disorder prediction 1233 1249 - -
Acco02g3533 1381 ProSitePatterns Zinc finger C2H2 type domain signature. 1351 1375 IPR013087 -
Acco02g3533 1381 SMART JmjN_1 15 55 IPR003349 -
Acco02g3533 1381 Pfam jmjN domain 17 50 IPR003349 -
Acco02g3533 1381 ProSiteProfiles Zinc finger C2H2 type domain profile. 1349 1375 IPR013087 -
Acco02g3533 1381 PANTHER LYSINE-SPECIFIC DEMETHYLASE 8 1315 - -
Acco02g3533 1381 MobiDBLite consensus disorder prediction 1231 1258 - -
Acco02g3533 1381 SUPERFAMILY beta-beta-alpha zinc fingers 1329 1372 IPR036236 -
Acco02g3533 1381 MobiDBLite consensus disorder prediction 550 576 - -
Acco02g3533 1381 SUPERFAMILY beta-beta-alpha zinc fingers 1289 1326 IPR036236 -
Acco02g3533 1381 ProSiteProfiles JmjC domain profile. 291 460 IPR003347 -
Acco02g3533 1381 Gene3D Cupin 9 464 - -
Acco02g3533 1381 ProSiteProfiles Zinc finger C2H2 type domain profile. 1289 1318 IPR013087 -
Acco02g3533 1381 ProSitePatterns Zinc finger C2H2 type domain signature. 1291 1313 IPR013087 -
Acco02g3533 1381 Gene3D Classic Zinc Finger 1287 1373 - -
Acco02g3533 1381 ProSiteProfiles Zinc finger C2H2 type domain profile. 1319 1348 IPR013087 -
Acco02g3533 1381 Pfam JmjC domain, hydroxylase 324 443 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3533 Acco-ChrAcco02 49700584 49709244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3533 1 857 C2H2 Transcription Factor Family AT5G04240 57.207 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g3533 JmjC 2.8e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g3533 02 49700584 49709244 Acco02g3533 02 49700584 49709244 ECH