Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3526 ATGGGGAGTAAATGGAAGAAGGCTAAGCTGGCTTTGGGTTTGAATCTCTGTGTTTTCGTCCCTAGAACTTCTGACGACTTGGATTCGCCTCCGGCTACTGAGCGGTTATCTGATGCTGCTCTGCTTTCGCCGGTAAATTGGGACATGGCTTCCTCGCAATCGAGGTCCGCCGCTCCTGCGGCTTCTTCTCACGCTTTAACGCTGTCCAAAAGTGCGAGCAAATCGTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAACAAGGATGTGGGCATGCTTTGTTCACTGCAGAATGTTCACATTCCTTCCATTTTCACTGCATTGCTTCAAACGTGAAACATGGAAACAAAATATGTCCAGTGTGCCGAGCGAAGTGGAAGGAAATACCCTTACTAGATCCCAGTTTGGATCCTCTCCCAGCCAGGGTTTCGCCAAATAATGCTTTCATGGCGGTTGTCCACAGCCTTCCTCGACCACCCCCTCGACGAGATTTGAATAGGCGACATGTTGTTCCACTTCATCAGGCTCCTGAGCCAGGTGTATTTGATGATGATGAATCCTTAGATCTCGAACATGTATGTTCTGGTAAGAGTGTTGCTGATACAGGTGCTGTTAAAACAATAGAAATTAAAACATACCCTGAAGTGTCAGTTGCTCCACAGTCCAACTCTTATAGTAATTTTAACGTCTTGGTCCATCTCAAGGCCACTGCTGTGGCAGCAGCTGCCAGAACACCCAACCTCAGTAGAAATCATGTTGGCTCAACACAGGTTTCTCAGACTCCGCGTGCCCCTGTTGACCTAGTGACAGTGCTTGACATTAGTGGTAGCATGGCTGGCACTAAGCTCGCACTACTAAAAAGGGCTATGGGATTTGTTATCCAGAATTTAGGTTCAAATGACCGGCTATCGGTTATTGCTTTCTCTTCTACAGCTCGCCGACTGTTTCCTCTGCGCCGAATGTCTGACTCTGGGCGGCAACAAGCACTGCAAGCTGTTAACTCTCTGGTTGCAAATGGGGGTACAAACATTGCTGAGGGCCTGAGAAAAGGTGCCAAGATAATGGAAGAACGAAGAGAAAAAAATCCAGTTGCCAGTATAATACTGTTATCTGATGGGCAGGACACTTACACTGTCGGTGGTTCTGGTACTAACCAATCACATCCAAACTACCACTTGCTTCTGCCTATGTCTATCGGTAATCGTGGCACTTCGGGATTCCAAATTCCTGTGCATGCTTTTGGATTTGGTGCAGATCATGATGCCTCATCAATGCACTCAATTTCAGAGAATTCTGGAGGGACTTTTTCCTTCATTGAGACTGAATCTGTGATACAGGACGCATTTGCACAGTGCATTGGCGGACTTTTGAGTGTTGTGGTTCAGGAGCTGCAAGTCGCAATTGAGTGCGTTGATGCAAATCTCAACCTTGTCTCACTCAAGGCTGGAAGTTATCCAAACCGTGTGATGGCTGGTAGACGCCAAGGATTTATTGATGTTGGAGATTTGTATGCTGAAGAGGAGAGAGATTTCCTAGTTTCAGTTAATGTCCCATCTGCTTCTGGCAATGAAACATCGTTGATAAAGGTCAACTGTGTTTACAAGGATCCATTAACTCAGGAGACCACAATATCAGAAAGTGAGGAAGTAAAGCTGGAGAGGCCTGAAAAAGTTGGGCAAGTGATTAAGTCGCTCGAAGTGGACAGACAGCATAACAGGCTTCAAGCAGCTGAAGCAATGGCCCAAGCGCGAAGTGCAGCTGAACATGGAGATTTAACAGGTGCAGTATCAATCCTTGAAAACTGCCGAAAAATGCTCTTGGAGTCTATTTCGGCTAGATCTCAGGATCGCCTTTGTCTTGCATTGGATGCTGAACTCAAGGAAATGCAAGAGAGGATGGTGAGCCGGCATGTGTATGAAGCATCGGGGAGAGCATACATTCTTTCTGGGCTGAGTTCCCACTCTTGGCAAAGAGCCACAGCAAGAGGCGATTCCACTGATAGCTTGAGTCTTGTTCAAGCATATCAAACCCCATCAATGGTTGAGATGCTTACTCGATCTCAAGCCTCGTTTCTAGGTAGTCCGTCATCAGGCCAGAGGCTTCTCCAACCCTTGTTGTCATACAGATCACAAACAAAGCCAAGGGTTGGAGGATTCTTGGAGAAATTCTTCCATGAAAATGCACCAGCAAGCTATGTAACAAACCAGCGAAACCGCCATGATAAGGAGCTTCTGTATTATGACTTGTTGCACCAACTTGTTGTGGAAGAGTGA 2277 0.4646 MGSKWKKAKLALGLNLCVFVPRTSDDLDSPPATERLSDAALLSPVNWDMASSQSRSAAPAASSHALTLSKSASKSSKQTCSICLTKMKQGCGHALFTAECSHSFHFHCIASNVKHGNKICPVCRAKWKEIPLLDPSLDPLPARVSPNNAFMAVVHSLPRPPPRRDLNRRHVVPLHQAPEPGVFDDDESLDLEHVCSGKSVADTGAVKTIEIKTYPEVSVAPQSNSYSNFNVLVHLKATAVAAAARTPNLSRNHVGSTQVSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMSDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEERREKNPVASIILLSDGQDTYTVGGSGTNQSHPNYHLLLPMSIGNRGTSGFQIPVHAFGFGADHDASSMHSISENSGGTFSFIETESVIQDAFAQCIGGLLSVVVQELQVAIECVDANLNLVSLKAGSYPNRVMAGRRQGFIDVGDLYAEEERDFLVSVNVPSASGNETSLIKVNCVYKDPLTQETTISESEEVKLERPEKVGQVIKSLEVDRQHNRLQAAEAMAQARSAAEHGDLTGAVSILENCRKMLLESISARSQDRLCLALDAELKEMQERMVSRHVYEASGRAYILSGLSSHSWQRATARGDSTDSLSLVQAYQTPSMVEMLTRSQASFLGSPSSGQRLLQPLLSYRSQTKPRVGGFLEKFFHENAPASYVTNQRNRHDKELLYYDLLHQLVVEE 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3526 758 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 78 689 - -
Acco02g3526 758 ProSiteProfiles VWFA domain profile. 268 454 IPR002035 -
Acco02g3526 758 Pfam von Willebrand factor type A domain 268 451 IPR002035 -
Acco02g3526 758 SUPERFAMILY vWA-like 263 454 IPR036465 -
Acco02g3526 758 CDD RING-H2_WAVH2 78 129 - -
Acco02g3526 758 Pfam RING-like zinc finger 80 109 IPR001841 -
Acco02g3526 758 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 130 IPR013083 -
Acco02g3526 758 CDD vWA_C3HC4_type 267 441 - -
Acco02g3526 758 Gene3D von Willebrand factor, type A domain 268 455 IPR036465 -
Acco02g3526 758 SMART ring_2 80 123 IPR001841 -
Acco02g3526 758 SUPERFAMILY RING/U-box 75 130 - -
Acco02g3526 758 Pfam VWA / Hh protein intein-like 617 689 IPR032838 -
Acco02g3526 758 SMART VWA_4 266 450 IPR002035 -
Acco02g3526 758 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3526 Acco-ChrAcco02 49538057 49542557 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3526 48 124 C3H Transcription Factor Family AT1G57730 34.146 4.56e-06 45.8