Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3523 ATGCGCTGGCTTCATGATTTCGGACATGGCGCTTCCGATTTGGGCGCTTTTTTTTTCTCCGTGTCAAATTCGGACTTATACACAGCCAGACACACAGCGAACATGATCGGAACAAATTTCATGGATGAGATAGACTGCGGCAATTTCTTCGACCACATTGATGACCTCCTCGATTTCCCCGCCGAAGATGTGGACACCGCCGCTTTGCCATCCGCCGCCGTGAATTGCGATTCCTTCCCCGACGTCTGGCCCGGCGAGTCCAACTCCTTGCCTGGCTCTGACTCTGTTTTCTCTGGCAACAACACCTCCGACCTCTCTGCTGAGCTCCCAGTTCCGTATGAAGAAATGGTCCAAATGGAATGGCTTTCGAACTTTGTGGAGGACTCGTTCACTGGTGGAAGCCTCACCACGAAGGACCTGGAGCAATCTTGCGTCACCAATATCAACGACTCAGCGCACAACCAATTCCAGACTTCAAGCCCGATTTCTGTCCTCGAGAGCAGCAGCTCCTGCTCCCGGGAGAAGCCGGTGGTGGCAACACCTCGAAGCCCGCTGGAAATGGTTGTCCCCGTGCCTTGTGGTGGACGTGCACGCAGCAAGCGCCCGCGTCCCGCCACATTCAATCCTCGTTCAGCGATGCAGCTCATTTCCCCTGCATCCTCTGTCGGTGAGAACACTCCGCAGCGAAATTCAGATTGTGAGAGTTTCGTGGAGTCTCATCCGGTGATCAAGATGCCAAAGCAATCTTCAGGGGAGCACAAGAAGAAGAAGAAGATCAAATTGACTTGTCCATTAGGTCCTGCTGATATGAATCAGCAGAATGCTTCATCACAGGCGGTGAGGAAATGTATGCATTGTGAGATAACAAAGACACCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGCGTTCGATACAAGTCCGGAAGGCTATACCCAGAATACAGACCGGCGGCTAGCCCTACGTTTTGCCCATCGTTGCACTCGAATTCCCATAAGAAGGTGCTCGAAATGAGAGGCAAAACACCACTTATTGATGCTTCACCTGAGCTCATTCCAAACACTAACAGCAGCCTTCCCCTGGAATACATGTGA 1113 0.5211 MRWLHDFGHGASDLGAFFFSVSNSDLYTARHTANMIGTNFMDEIDCGNFFDHIDDLLDFPAEDVDTAALPSAAVNCDSFPDVWPGESNSLPGSDSVFSGNNTSDLSAELPVPYEEMVQMEWLSNFVEDSFTGGSLTTKDLEQSCVTNINDSAHNQFQTSSPISVLESSSSCSREKPVVATPRSPLEMVVPVPCGGRARSKRPRPATFNPRSAMQLISPASSVGENTPQRNSDCESFVESHPVIKMPKQSSGEHKKKKKIKLTCPLGPADMNQQNASSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRGKTPLIDASPELIPNTNSSLPLEYM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3523 370 ProSitePatterns GATA-type zinc finger domain. 283 308 IPR000679 GO:0006355|GO:0043565
Acco02g3523 370 PANTHER GATA TRANSCRIPTION FACTOR 40 348 - -
Acco02g3523 370 ProSiteProfiles GATA-type zinc finger domain profile. 277 313 IPR000679 GO:0006355|GO:0043565
Acco02g3523 370 Gene3D - 277 327 IPR013088 GO:0006355|GO:0008270
Acco02g3523 370 FunFam GATA transcription factor 272 356 - -
Acco02g3523 370 CDD ZnF_GATA 282 329 IPR000679 GO:0006355|GO:0043565
Acco02g3523 370 PIRSF Txn_fac_GATA_plant 31 363 IPR016679 GO:0003677|GO:0005634|GO:0045893
Acco02g3523 370 SMART GATA_3 277 327 IPR000679 GO:0006355|GO:0043565
Acco02g3523 370 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 281 340 - -
Acco02g3523 370 Pfam GATA zinc finger 283 316 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3523 Acco-ChrAcco02 49505529 49506890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3523 47 347 C2C2-Gata Transcription Factor Family AT1G08010 37.217 3.14e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Acco02g3523 GATA 1.4e-14 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g3523 02 49505529 49506890 Acco02g3523 02 49505529 49506890 ECH