Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3459 ATGGGGACGATGAATCTTCTTGTGTTTTTATTCTTCTATGTGATGGCTTCATGCTATATGGCGGTGGCCAAGGTGGTGCTGATTGGGAACAACGTCACTCTATCCTTCGACGATATTGAAGCTAATTTTGCTCCAGCAATGAAAGGTTCTGGAGAATGTGGCGTCTTGTATATAGCAGAGCCGGTTGATGCATGTACAGAACTGACAAATAAATTTGAACCGCTTTCAAATACAAGTTCACCTTTTGTTTTGATAATTAGAGGGGGCTGCAGCTTTGAAGAGAAAGTCAGAAGAGCACAGAAGGCTGGCTTTAAAGCCGCAATTGTCTATGATGATGAAGACGATGGCATCTTAGTTTCAATGGCAGGAAATTCAGGTGGTATAAAAATACATGCAGTATTTGTAACTAAAGCCTCAGGTGAAACACTGAAAAGATATGCTGGACTGACTAACATTGAAGTGTGGCTAATTCCAAGTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTACTAGCAATGTCAGCAGTTTTGGCTACTTGTTTCTTTGTCCGGAGGCATCGCATTCGGAGGGAAAGGCCTCAGACTTCTCGTGTTCGTGAGTTTCATGGGATGAGTAGTCGCCTTGTGAAAGCAATGCCTAGTTTGATATTTACTGCTGTTTTAGAGGATAATTGCACATCAATGACATGTGCAATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGTGTGGATGCTTGGCTCACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCGAGGACTGGTCTACTTGATCCTCCACCTTCAGAATCCACGCCTTTGCTTTCATCTGGTGCAGCATCTGCAGCATCCTCTGTAGCGTCATCTCTGAGATCATCATTAGCATCATCTGCTGCAATACAAATTGGCCGGGCATCGTCACGGTCCCCATCTGTTTCTCGGGACCATTCTGTGGCTAGTACTCCCTACATTCAGCCATCTTTTAGGTCCCTTCGCCAATCTCCTTTCATGAGTGTCAGTCGAAGCTCAGTAGATCTTAGGAACGCATCCCTAAGATCTCAAGCTTCTCTTTTGAATTCTCCCCATTCTATGGGTTACCCATCAATGTCATCAATGAACTCAAGGTACTTGTCTCCACATATTCAAAGCCCGAGCAATGTTTCAGCAAGTTATCTTGGTTCTTCCAGTCATCATCAACACCCTCTTCGTTATAGCGAGTCAGCTGCAAGTTTCTCTCCATTTGCTTCCGCCCAGTCCCTTCCAGAATGCTGA 1335 0.4427 MGTMNLLVFLFFYVMASCYMAVAKVVLIGNNVTLSFDDIEANFAPAMKGSGECGVLYIAEPVDACTELTNKFEPLSNTSSPFVLIIRGGCSFEEKVRRAQKAGFKAAIVYDDEDDGILVSMAGNSGGIKIHAVFVTKASGETLKRYAGLTNIEVWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQTSRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSMTCAICLEDYCVGEKLRILPCCHKFHAACVDAWLTSWRTFCPVCKRDARTGLLDPPPSESTPLLSSGAASAASSVASSLRSSLASSAAIQIGRASSRSPSVSRDHSVASTPYIQPSFRSLRQSPFMSVSRSSVDLRNASLRSQASLLNSPHSMGYPSMSSMNSRYLSPHIQSPSNVSASYLGSSSHHQHPLRYSESAASFSPFASAQSLPEC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3459 444 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 159 290 - -
Acco02g3459 444 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 195 282 - -
Acco02g3459 444 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 23 157 - -
Acco02g3459 444 Gene3D - 17 156 - -
Acco02g3459 444 SUPERFAMILY RING/U-box 228 282 - -
Acco02g3459 444 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Acco02g3459 444 SUPERFAMILY PA domain 80 157 IPR046450 -
Acco02g3459 444 Pfam PA domain 63 143 IPR003137 -
Acco02g3459 444 CDD PA_C_RZF_like 21 164 IPR044744 -
Acco02g3459 444 SMART ring_2 235 276 IPR001841 -
Acco02g3459 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 282 IPR013083 -
Acco02g3459 444 Pfam Ring finger domain 234 277 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3459 Acco-ChrAcco02 48630652 48637813 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3459 23 443 C3H Transcription Factor Family AT1G22670 47.696 2.86e-116 345