Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3439 ATGCTCTCTAGTTCGTGTTTGCAGGAGAGATCTTCAATGGGGGATATGGAATCATGTGTGCCACCAGGATTTAGATTCCGTCCAACAGAGGAAGAACTTGTAGGATATTACCTCAAGAGGAAGATTAACTCACTCAAAATCAACCTAGATGTCATTGTTGAGCTAGATCTCTACAAAATTGAACCATGGGACATACAAGATAGATGCAAGCTAGGATATGAGGAACAGAACGAGTGGTATTTTTTCAGCCACAAGGACAAGAAGTATCCGACCGGGACAAGGACGAATAGGGCGACAGCAGCGGGGTTCTGGAAGGCGACAGGGAGGGACAAGGCCGTGATGTCGAAGAACAAGATCATAGGAATGAGGAAGACTCTTGTATTCTACCAGGGACGTGCCCCTAATGGCAGGAAATCTGACTGGATCATGCATGAATATCGCCTCCAATCTTCTGAACATGCCCCTCCTCAGGAAGAAGGATGGGTTGTGTGTAGAGCATTCATAAAGCCAAGTCCAAGTCATATGAGGCCAGGTTTTGAAGGAGCGCAGTGCTATTTCAGAGACCATGAGATCAACAGCCTTGGAAGGCCCTTGATCTCTTCATTTTCTGAGATTCAGAATCAAACCCATCACTTTTTGATGAATAACAATACCTCTCATCATCATCATCACCAACCTTTGATCAATTTGGATCAGCAGAACCAACAACTTGTTGATCTTCCTCAACTAGATAGCCCCAGTCTGGGAATAAGGTCATCATTATCAGATAATAATAATTATGGCCAAACCAATATTAATAATAATATTGGGGAAGAATATTACAGTGATGACGTGGAAAGCTTGGACCATTTGTTTGCTTCAAATCTCACAGATACATCAACTTCTGGTTCTGCTAATTTCCTTGCACACACCAACTTTCCCATGAACATGATACCTCATAACAGTGAAGCGAGCCAAGCCCTAGGATTATGCTTTCCTGATTCTTCATAG 990 0.4303 MLSSSCLQERSSMGDMESCVPPGFRFRPTEEELVGYYLKRKINSLKINLDVIVELDLYKIEPWDIQDRCKLGYEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNKIIGMRKTLVFYQGRAPNGRKSDWIMHEYRLQSSEHAPPQEEGWVVCRAFIKPSPSHMRPGFEGAQCYFRDHEINSLGRPLISSFSEIQNQTHHFLMNNNTSHHHHHQPLINLDQQNQQLVDLPQLDSPSLGIRSSLSDNNNYGQTNINNNIGEEYYSDDVESLDHLFASNLTDTSTSGSANFLAHTNFPMNMIPHNSEASQALGLCFPDSS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3439 329 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 252 - -
Acco02g3439 329 Pfam No apical meristem (NAM) protein 21 148 IPR003441 GO:0003677|GO:0006355
Acco02g3439 329 FunFam NAC domain-containing protein 29 173 - -
Acco02g3439 329 SUPERFAMILY NAC domain 9 169 IPR036093 GO:0003677|GO:0006355
Acco02g3439 329 Gene3D NAC domain 29 172 IPR036093 GO:0003677|GO:0006355
Acco02g3439 329 ProSiteProfiles NAC domain profile. 20 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3439 Acco-ChrAcco02 48381259 48384164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3439 16 328 NAC Transcription Factor Family AT1G71930 53.776 3.71e-106 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Acco02g3439 NAM 1.9e-36 No_clan