Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3425 ATGCAGGCGAAAACTTCCCCTAATCCACCCTCTTTTCCATATTTCAGTCTGCAGCATAGTAATCAACAGAGGTGGGAAGATCCCTCTATGTCAGATTACGGTATCCAGATGGAGACCCTGTTTAAAGAAAGCAATCAAGCCTGTGGAACCCAGTCCTTGCTTCTGTGTGGTTCCAATGACGGGATCAAGATCCCCAATCAAGAAAATTGTCAGATGGGCGACACTTCACAAACCGGTAAACTTCAAGATTGGGATCCCAGCATAATGTTGGAAAATCTTTCTTTCCTGGAAGATAAGATTCAGCAGCTCCGGGGCTTATTGCATTTGATTTCTGATAAGAAAGGTCAAGAATTAGGACAACCCGACGAAATTATAACTCAAGAGAAGCAGCTTATCACAGCCAATCTGACATCGATCATCGTTCAATTGATCTCTACAGCAGGAAGTCTTCTTCCTTCTGTCAGGCTTGCTGCTTCAAACACCAGTCCATCTGTGGGACAGCACGGCCAGATTCCTGGGATTGCTTTTCCATCGGGATTAGATCTGAGCAATAGTAGTATCCAACCACAACATGATATCAGAGATAAAATATGTGATCAAGCCAACCAGATTGACCATACTAACATGTGTGAAATGGACCAAAACCACATGGAAGAACACGAATTGAAAGAGGAAGAGGATGGGGATGAGGGCGAGAACCTTCCACCGGGTTCATTTGAGATTTTACAGCTAGAAAAAGAAGAAATCCTTGCTCCTCATACGCACTTCTGTACAATATGTGGTAAGGGATTCAAGAGAGATGCGAATCTTCGGATGCATATGAGAGGCCATGGCGATGAGTACAAAACCCCGGAAGCTCTTGCAAAACCTAACAAAGAATCCATGTCTGAACCAAAGCTCATCAAGAGGTATTCCTGTCCCTACCCTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTCCAACCTCTGAAGACCATTCTGTGTGTGAAAAACCATTACAAAAGAACTCACTGTGACAAGAGTTACATTTGCAGCCGGTGCCACACAAAGAAATTTTCGGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAGGGATAAATGGCTTTGTTCATGTGGTACAACATTTTCAAGGAAAGACAAGCTTTTTGGGCACATTGCCCTGTTTCAAGGCCATACACCAGCTATACCATTGGATGAATCAAAAGCACCAGCTGCGCAAGCTGATATGGAAATGAATGAGAACAACAGCAACAATAATAATAAGGGAGGAAGCATTAACTTGAGCTTTGGATCAAATGCTTCTTGTTGTGAAAATGGGAATCAAAACATGATGAATGTGAAAGGTATTACTGATGATCCTATCAGTTACCTCTCATCATTGAACTTTGAAACCTGTAACTTTGGCGAGTTCAATGATTTTCCTCGACCCCCATTTGAAGACACTGCCAAAGGTTCATTTCCTTTTCTCATGTCTGAATCCTTCAATTATTCTCCAAAATCTGGGGGAGAATCATGTCCTGACAATCTGTTGTGA 1542 0.4261 MQAKTSPNPPSFPYFSLQHSNQQRWEDPSMSDYGIQMETLFKESNQACGTQSLLLCGSNDGIKIPNQENCQMGDTSQTGKLQDWDPSIMLENLSFLEDKIQQLRGLLHLISDKKGQELGQPDEIITQEKQLITANLTSIIVQLISTAGSLLPSVRLAASNTSPSVGQHGQIPGIAFPSGLDLSNSSIQPQHDIRDKICDQANQIDHTNMCEMDQNHMEEHELKEEEDGDEGENLPPGSFEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESMSEPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYICSRCHTKKFSVMADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPAAQADMEMNENNSNNNNKGGSINLSFGSNASCCENGNQNMMNVKGITDDPISYLSSLNFETCNFGEFNDFPRPPFEDTAKGSFPFLMSESFNYSPKSGGESCPDNLL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3425 513 Gene3D Classic Zinc Finger 238 308 - -
Acco02g3425 513 MobiDBLite consensus disorder prediction 1 26 - -
Acco02g3425 513 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 282 IPR013087 -
Acco02g3425 513 SMART c2h2final6 304 337 IPR013087 -
Acco02g3425 513 SMART c2h2final6 342 364 IPR013087 -
Acco02g3425 513 SMART c2h2final6 255 277 IPR013087 -
Acco02g3425 513 MobiDBLite consensus disorder prediction 218 237 - -
Acco02g3425 513 ProSitePatterns Zinc finger C2H2 type domain signature. 257 277 IPR013087 -
Acco02g3425 513 SUPERFAMILY beta-beta-alpha zinc fingers 254 279 IPR036236 -
Acco02g3425 513 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 69 429 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3425 Acco-ChrAcco02 48126396 48127937 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3425 222 513 C2H2 Transcription Factor Family AT1G34370 68.013 2.28e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g3425 None None None