Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3420 ATGCAGGCAAAAATTTTGCCTAATCCACCCTCTTTTCCAGATTTCAGTTTGCAGAATAGTCATCAACAGAGGTGTGAAGATCCGTCTATGTCAGACAACGATATCTGGATGGAAGCCCTATTCAGAGAATTCAACCAAGCATGTGGAACCCAGTCCTTGCCCTCATGTGGTTCCAATGACGGGGTCAAGATCCCGAATCAAGAAAATTTTCAGATGGGCGACATGTCACGAGCTGGTAAACTCCTAGATTGGGATCCCAGCATAATGTTGGAAAATCTTTCTTTCCTGGAAGATAAGATTCATCAACTACAGGGCCTATTGCATTTGATTGTTGATAAGAAAGGTCAACAATTTGGACAACCTGATGAAATTATAACTCAAGAGAAGCGGCTTATCACGGCCAATCTGACATCGATCATCATTCAATTGATCTCTACAGCTGGAAGTCTTCTTCCTTCTGTCAGGCTTGCTTCTTCAAACACCAGTCCATCTGAGGGACAACATGGCCAGATTCCCGGGATTAATTTTCTGTCTGGATTAGATCCAAGCAGTAGTAGTATTCAACCACAACATGATATCAGAGATAAAATATGTGATCAATCCAACCAGATTGATCTTACTAACATGTGTGAAATGGAGCAAAACCACATGGAAGAACATGAATCAAAAGATGAAGAGGATGTGGATGAGGGTGAGAACCTTCCACCGGGCTCATTTGAGATTTTACAGCTAGAAAAGGAGGTAATCCTTGCTCCTCACACACACTTCTGTACAATATGTGGTAAGGGATTCAAGAGAGATGCGAATCTTCGGATGCATATGAGAGGCCACGGCGATGAGTACAAAACCCCGGAAGCACTTGCGAAACCTAATAAAGAATCAGTGTCTGAACCGAGGCTCATCAAGAGATATTCATGTCCCTACCTTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTTCAACCTTTGAAGACTATTTTGTGTGTGAAGAACCATTACAAAAGAAGTCACTGTGACAAGAGTTACATTTGCAGCCGCTGCCACACGAAGAAATTTTCAGTCATGGCGGACCTAAAAACTCACGAAAAGCACTGTGGTAAGGATAAATGGCTCTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTGTTTCAAGGCCATACACCAGCAATACCATTGGATGAATCAAAAGCACCAGCTGGGCAAGCTGATAAGGAAATCAATGAGAACAACAACAACAAAACCATTAATAACAAGGGAGGAAGCATTAACTTGAGCTTTGGATCAAATGCTTCTTGTTGTGAAAATGGGATTCAAAACATTGTGGATGTGAAAGGTATTACTGATGATCCTGTCAGTTACCTCTCATCATTGAACTTTGAAACCTGTAACTTTGCTGAATTCAATGATTTTCCTCGACCCCCGTTTGAAGACGCCACTGAAGGTTTGTTCCCTTTTCTCATGTCAGAATCCTTCAATTATTCTCCTAAATCTGCGGGGGAATCATGTCCTGACAATCTGTTGTGA 1548 0.4186 MQAKILPNPPSFPDFSLQNSHQQRCEDPSMSDNDIWMEALFREFNQACGTQSLPSCGSNDGVKIPNQENFQMGDMSRAGKLLDWDPSIMLENLSFLEDKIHQLQGLLHLIVDKKGQQFGQPDEIITQEKRLITANLTSIIIQLISTAGSLLPSVRLASSNTSPSEGQHGQIPGINFLSGLDPSSSSIQPQHDIRDKICDQSNQIDLTNMCEMEQNHMEEHESKDEEDVDEGENLPPGSFEILQLEKEVILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALAKPNKESVSEPRLIKRYSCPYLGCKRNKDHKKFQPLKTILCVKNHYKRSHCDKSYICSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDESKAPAGQADKEINENNNNKTINNKGGSINLSFGSNASCCENGIQNIVDVKGITDDPVSYLSSLNFETCNFAEFNDFPRPPFEDATEGLFPFLMSESFNYSPKSAGESCPDNLL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3420 515 SUPERFAMILY beta-beta-alpha zinc fingers 254 279 IPR036236 -
Acco02g3420 515 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 282 IPR013087 -
Acco02g3420 515 SMART c2h2final6 342 364 IPR013087 -
Acco02g3420 515 SMART c2h2final6 255 277 IPR013087 -
Acco02g3420 515 SMART c2h2final6 304 337 IPR013087 -
Acco02g3420 515 ProSitePatterns Zinc finger C2H2 type domain signature. 257 277 IPR013087 -
Acco02g3420 515 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 76 429 IPR044300 GO:0010044|GO:0010447
Acco02g3420 515 MobiDBLite consensus disorder prediction 1 29 - -
Acco02g3420 515 MobiDBLite consensus disorder prediction 12 26 - -
Acco02g3420 515 Gene3D Classic Zinc Finger 239 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3420 Acco-ChrAcco02 48074302 48075849 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3420 223 515 C2H2 Transcription Factor Family AT1G34370 66.779 2.74e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g3420 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g3420 02 48074302 48075849 Acco02g3420 02 48074302 48075849 ECH