Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3406 ATGGAAGCGTTGGATGAACTTTCAGAGTTGGAGTGGATTCGTCAGCATCTTCTTGGTGAGTTTCCGTCCTCAGAACACTTATTGTCCAGTCTGTATCCTGTAAAGCTCGAGGATTCTTCTTCATCGGAGTTTGATCTGAAACCGATTGTTCCGGGGCAAAGTTTTGAAGATGTTGGGGAGGTTTTGAACTCCGTGTCCGAGGTTGAAATGGAGAAGAAGCCAACGTCGCCTGAGACTGAGAAGGCTGAGTGCGACGAGGCGGCAATTTTTAGGCGGTACAGGGGCGTTCGGAGGAGGCCGTGGGGCAAGTTTGCGGCGGAGATCCGAGACCCGACCCGAAAAGGGACACGGGTTTGGCTGGGTACGTTTGATACTGAGATTGATGCTGCGAAGGCTTATGATTGTGCTGCTTTCAGAATGAGGGGTCGAAGGGCAATATTGAACTTTCCTCTGGAGGCCGGTGAATCTGATCCGACATCCAACCGCTGTGCCCGGAAAAGGAGAAGACAAAGTTCACCGGAGGAGTTGTCCCAAATTTCCACTGAGATTTAA 552 0.5091 MEALDELSELEWIRQHLLGEFPSSEHLLSSLYPVKLEDSSSSEFDLKPIVPGQSFEDVGEVLNSVSEVEMEKKPTSPETEKAECDEAAIFRRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDTEIDAAKAYDCAAFRMRGRRAILNFPLEAGESDPTSNRCARKRRRQSSPEELSQISTEI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3406 183 SMART rav1_2 92 156 IPR001471 GO:0003700|GO:0006355
Acco02g3406 183 PRINTS Ethylene responsive element binding protein signature 132 152 IPR001471 GO:0003700|GO:0006355
Acco02g3406 183 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Acco02g3406 183 FunFam Ethylene-responsive transcription factor 2 91 152 - -
Acco02g3406 183 Gene3D AP2/ERF domain 91 152 IPR036955 GO:0003700|GO:0006355
Acco02g3406 183 PANTHER DNA-BINDING DOMAIN 71 169 IPR044808 GO:0003700|GO:0009873
Acco02g3406 183 Pfam AP2 domain 92 142 IPR001471 GO:0003700|GO:0006355
Acco02g3406 183 MobiDBLite consensus disorder prediction 159 173 - -
Acco02g3406 183 SUPERFAMILY DNA-binding domain 92 152 IPR016177 GO:0003677
Acco02g3406 183 ProSiteProfiles AP2/ERF domain profile. 92 150 IPR001471 GO:0003700|GO:0006355
Acco02g3406 183 MobiDBLite consensus disorder prediction 151 183 - -
Acco02g3406 183 CDD AP2 100 150 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3406 Acco-ChrAcco02 47743814 47744365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3406 1 178 AP2-EREBP Transcription Factor Family AT5G07580 40.580 6.15e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco02g3406 AP2 1.4e-14 CL0081