Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3373 ATGGCTTCTTGTCAAGATTGTTCTCCTATTTGTTTCTTGTCTGCTAATTTTGGCAAAATCACCCCTCTCGCCTTTCCTCTTTATTTCGTGCTACCTCATATATCTCCGCAAGAAGAATTCCTAGCCTCTCTATTCAGATCTCCTCCCAGATTTCTCTACAAGATGCAAATATTTGTCAAAACCTTGACCGGCAAGACCATCACCCTTGAGGTGGAAAGTTCCGATACGATAGACAACGTGAAGACGAAGATTCAAGATAAGGAAGGCATCCCTCCTGACCAACAAAGGCTCATCTTCGCCGGCAAACAACTTGAGGATGGAAGAACCCTAGCTGATTATAATATCCAGAAGGAGTCAACCCTCCACCTTGTTCTCCGTCTCAGGGGAGGGATGCAGATCTTTGTGAAGACTCTAACAGGCAAGACCATCATTCTTGAGGTGGAGAGCTCCGATACGATTGATAACGTCAAGGCCAAGATTCAGGACAAGGAAGGGGTTCCTCCTGACCAACAAAGACTCGTCTTTGCCGGCAAACAACTCGAGGATGGAAGAACCCTCGCTGACTATAATATCCAGAAGGAGTCGACCCTCCACCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTTGTGAAGACTCTAACAGGCAAGACAATCACCCTTGAGGTGGAGAGCTCCGATACGATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCTGACCAACAAAGACTCATCTTTGCCGGCAAGCAACTCGAGGATGGACGAACCCTAGCTGACTACAACATTCAAAAGGAATCCACCCTGCACTTGGTTCTGCGACTCCGTGGCGGGATGCAAATTTTTGTGAAGACTCTGACAGGGAAGACCATAACTTTGGAGGTTGAAAGTTCTGATACTATAGATAATGTAAAGGCTAAGATACAGGACAAGGAGGGTGTCCCTCCTGATCAACAAAGACTCATCTTTGCCGGCAAACAACTGGAGGATGGACGAACCCTAGCTGATTACAACATTCAAAAAGAATCCACCCTGCACTTAGTTCTGCGACTCCGTGGTGGGATGCAAATTTTTGTGAAGACTCTGACAGGGAAGACCATAACTTTGGAGGTTGAAAGTTCTGATACTATAGATAATGTAAAGGCTAAGATCCAGGACAAGGAGGGTATCGCTCCTGACCAACAAAGACTCATCTTTGCTGGCAAACAACTAGAGGATGGACGAACCCTAGCTGATTACAACATTCAAAAAGAATCCACCCTGCATTTGGTTCTGCGACTCCGAGGTGGCATGCAAATTTTTGTGAAAACTCTGACGGGGAAGACTATAACCTTGGAGGTCGAAAGTTCAGACACGATTGATAATGTGAAAACGAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAACAGCGGCTTATTTTTGCTGGGAAGCAGTTGGAAGATGGTAGAACTTTGGCTGACTATAATATTCAGAAGGAATCTACTCTCCATCTTGTCCTCCGTCTCCGCGGTGGCTTCTAA 1536 0.4622 MASCQDCSPICFLSANFGKITPLAFPLYFVLPHISPQEEFLASLFRSPPRFLYKMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIILEVESSDTIDNVKAKIQDKEGVPPDQQRLVFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGVPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIAPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3373 511 PANTHER UBIQUITIN 207 284 - -
Acco02g3373 511 CDD Ubl_ubiquitin 55 130 - -
Acco02g3373 511 ProSitePatterns Ubiquitin domain signature. 385 410 IPR019954 -
Acco02g3373 511 CDD Ubl_ubiquitin 207 282 - -
Acco02g3373 511 SUPERFAMILY Ubiquitin-like 434 510 IPR029071 -
Acco02g3373 511 SMART ubq_7 131 202 IPR000626 GO:0005515
Acco02g3373 511 SMART ubq_7 207 278 IPR000626 GO:0005515
Acco02g3373 511 SMART ubq_7 359 430 IPR000626 GO:0005515
Acco02g3373 511 SMART ubq_7 283 354 IPR000626 GO:0005515
Acco02g3373 511 SMART ubq_7 55 126 IPR000626 GO:0005515
Acco02g3373 511 SMART ubq_7 435 506 IPR000626 GO:0005515
Acco02g3373 511 ProSiteProfiles Ubiquitin domain profile. 131 206 IPR000626 GO:0005515
Acco02g3373 511 FunFam Polyubiquitin 3 207 282 - -
Acco02g3373 511 FunFam Polyubiquitin 3 435 510 - -
Acco02g3373 511 CDD Ubl_ubiquitin 359 434 - -
Acco02g3373 511 Gene3D - 132 206 - -
Acco02g3373 511 Gene3D - 52 131 - -
Acco02g3373 511 Gene3D - 207 282 - -
Acco02g3373 511 Gene3D - 359 434 - -
Acco02g3373 511 Gene3D - 283 358 - -
Acco02g3373 511 Gene3D - 435 511 - -
Acco02g3373 511 ProSiteProfiles Ubiquitin domain profile. 435 510 IPR000626 GO:0005515
Acco02g3373 511 FunFam Polyubiquitin 3 55 130 - -
Acco02g3373 511 ProSitePatterns Ubiquitin domain signature. 233 258 IPR019954 -
Acco02g3373 511 FunFam Polyubiquitin 3 359 434 - -
Acco02g3373 511 ProSiteProfiles Ubiquitin domain profile. 207 282 IPR000626 GO:0005515
Acco02g3373 511 SUPERFAMILY Ubiquitin-like 54 130 IPR029071 -
Acco02g3373 511 SUPERFAMILY Ubiquitin-like 130 206 IPR029071 -
Acco02g3373 511 ProSitePatterns Ubiquitin domain signature. 309 334 IPR019954 -
Acco02g3373 511 ProSiteProfiles Ubiquitin domain profile. 359 434 IPR000626 GO:0005515
Acco02g3373 511 PRINTS Ubiquitin signature 238 258 IPR019956 -
Acco02g3373 511 PRINTS Ubiquitin signature 217 237 IPR019956 -
Acco02g3373 511 PRINTS Ubiquitin signature 259 280 IPR019956 -
Acco02g3373 511 CDD Ubl_ubiquitin 131 206 - -
Acco02g3373 511 FunFam Polyubiquitin 3 131 206 - -
Acco02g3373 511 ProSitePatterns Ubiquitin domain signature. 81 106 IPR019954 -
Acco02g3373 511 ProSiteProfiles Ubiquitin domain profile. 283 358 IPR000626 GO:0005515
Acco02g3373 511 CDD Ubl_ubiquitin 283 358 - -
Acco02g3373 511 ProSitePatterns Ubiquitin domain signature. 461 486 IPR019954 -
Acco02g3373 511 ProSiteProfiles Ubiquitin domain profile. 55 130 IPR000626 GO:0005515
Acco02g3373 511 ProSitePatterns Ubiquitin domain signature. 157 182 IPR019954 -
Acco02g3373 511 CDD Ubl_ubiquitin 435 510 - -
Acco02g3373 511 FunFam Polyubiquitin 3 283 358 - -
Acco02g3373 511 Pfam Ubiquitin family 209 280 IPR000626 GO:0005515
Acco02g3373 511 Pfam Ubiquitin family 133 204 IPR000626 GO:0005515
Acco02g3373 511 Pfam Ubiquitin family 285 356 IPR000626 GO:0005515
Acco02g3373 511 Pfam Ubiquitin family 57 128 IPR000626 GO:0005515
Acco02g3373 511 Pfam Ubiquitin family 437 508 IPR000626 GO:0005515
Acco02g3373 511 Pfam Ubiquitin family 361 432 IPR000626 GO:0005515
Acco02g3373 511 SUPERFAMILY Ubiquitin-like 205 282 IPR029071 -
Acco02g3373 511 SUPERFAMILY Ubiquitin-like 358 434 IPR029071 -
Acco02g3373 511 SUPERFAMILY Ubiquitin-like 282 358 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3373 Acco-ChrAcco02 47239271 47242526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3373 435 511 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 1.71e-45 154