Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3335 ATGAAGACGCTCGAGAATAGAAATGCTAGCTGGGTGTTGTTTGAGAGGAGGAAGAAGGGTTTGTTGGAGAAGGTCTTTGAACTTTCCACCCTTTGTGGAATTGATGCTTGTGTAATAATTTTTCCTCCTCCAGATTCTGAAAATTCTAAAGCTGAAACCTTTCCTCAAGATCCATCAAAAGTGATAAACAATATTCAAATGTATAACGCCAAGAAGAGCTGCCCCGAGAAACAGAAGAAGAACTACGATCTATGTGAGTTCTTCAGTGATAGGAAGAACCAGATTGAAGCTGAGACCTCCAGAGTTCGTGAACAGAAACTCAAGATGCTATGTCCAACGGACGACAGCCTCCACAACCTGGGAGAGGATCAACTGAGGACGTTAATTTCTTTGTTGGATTCTAAAATTCAAGATTGTGATCATACAATTGGGCTCTTAAAAGCAAAGAAATCAGGGATGACTGTGGTTCCAATGGGTTTGGACCCGTTCGATTATAATTGTTCAGATATTCCTGTTTCTGTAATTCCTCCCCATGATGTTTCAGAAAAAACCCACATGGGTTTTGTGCCAAATACAAGTGATGAAGCCAATCTTGTCTCTCTCTCAGATCCAATGATGCATCTTGTTGGTGATAACAACACTGACCTCATGGATAATCATGTGCTTGGTTTTGGATTACAGAATATTGATTTAGATTTGCTTTTGGGCTTAGGGTTGAACCAAAACGGAGCAGCATTTGGGCCTCAAGAGAGCAAGATATCAAGTCAGTTTTATCATCTTCAACAGGCATGGAGGAGTAGATGGTCGCAAGTGTTGCCAATTTTCCCTGAGTGTTATAGAGATGTAGAAGAGGTTTTGCACATTCTAAGGGGACTGCTGTTATGCAAGAAACCTATGGCAGCAGATTGTACATCCCAGATTTTTTACCCTGATTTTCAGAAACCAAGTGAACCTGCAAAGGTTATTCTCAACACTTGGAAGCTTTTTGTGCAACCCAAGGATTAG 1005 0.41 MKTLENRNASWVLFERRKKGLLEKVFELSTLCGIDACVIIFPPPDSENSKAETFPQDPSKVINNIQMYNAKKSCPEKQKKNYDLCEFFSDRKNQIEAETSRVREQKLKMLCPTDDSLHNLGEDQLRTLISLLDSKIQDCDHTIGLLKAKKSGMTVVPMGLDPFDYNCSDIPVSVIPPHDVSEKTHMGFVPNTSDEANLVSLSDPMMHLVGDNNTDLMDNHVLGFGLQNIDLDLLLGLGLNQNGAAFGPQESKISSQFYHLQQAWRSRWSQVLPIFPECYRDVEEVLHILRGLLLCKKPMAADCTSQIFYPDFQKPSEPAKVILNTWKLFVQPKD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3335 334 SUPERFAMILY SRF-like 1 88 IPR036879 GO:0003677|GO:0046983
Acco02g3335 334 Gene3D - 5 94 IPR036879 GO:0003677|GO:0046983
Acco02g3335 334 ProSiteProfiles MADS-box domain profile. 1 41 IPR002100 GO:0003677|GO:0046983
Acco02g3335 334 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 137 - -
Acco02g3335 334 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Acco02g3335 334 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 5 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3335 Acco-ChrAcco02 46184954 46187987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3335 1 217 Type I MADS-box Gene Family AT5G58890 22.407 3.40e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Acco02g3335 SRF-TF 7.7e-12 No_clan