Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3326 ATGAAGTCGACTGAGCTTCGATGGAGGACGACGAGCTTGACGACAATAGAAAAATGGCGTCGGATGTTGGAGATTCCAGCGAAGGACGACGGAAGCTGTAATCTCGACTCGATCTTACAAACGGGCAATGGAAGCACTCTTAGGAAGAAAAGCATAATTGTAAATCTCATGTGTTCTTGTCGGGAGAAGGAGATAAAGTTTCTTGTTCGTACTTTGGCCAGGAACTTACGGACTGGTGCAATGATTAGAACTGTTTTGCCTGCTCTGGCTCAAGCCGTCATAATGAATTCATGCCCTGTTTTACTCCAAGATGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGGCCTTTCGGCAGAAATCATGGAAGCATATAACATACTCCCAAATCTGGATTTTCTAATACCATCTTTAATGAACAAAGGCACTAATTTTTGTGCTTCAAGTTTGTCAATGGTTCCAGGAATACCTATCAAGCCTATGCTTGCAAAGATTACCAATGGCATTCCCCAAGTGCTGAAGTTATTTCAAAATAAAGCATTTACTTGTGAATATAAATATGATGGCCAGCGGGCCCAGATTCACAAATTAAGTGATGGGTCGATTCGTGTTTTCTCAAGAAATGGAGATGAAACAACATCAAGATTTCCAGATTTGATTGACGTAGTCAAGGAATTCTGCAAGCCTGCTTCAGTGACTTTTATACTGGATGCAGAGATTGTAGGTATTGATAGGAAGAATGGATATAGGTATATGGCATTCCAAGAGTTATCTTCACGTGGGAGAGGAAGTAAAGATGCCTCAGTTTCTACAGATAGCATAAAGGTGGACATTTGCCTGTTTGTCTTTGATATCATGTTTGCTAATGGACAGCAGCTTTTGGGTTTTCCTCTCCGTGAAAGGCGAAAATATCTGCAGGATTTGTTCCATGACGAGAAACTTGGTTATTTTGAATATGCAAAGGAAACAACCATTGAAGTAGATGATGCATCATTAACCTGTGAAGCCACAGTAAGTAAGATAAACTCTTTCCTAGAAGGCGCAATCCATTCTTCATGTGAAGGAATTATGGTGAAATCGTTAGATGTTGATGCTGGATATTCTCCATCAAAGCGCACAGACACATGGTTAAAGGTGAAGCGAGATTATTTGGATGGTTTAAATGATTCTCTTGATTTAGTACCAATTGGTGGTTGGTATGGAAATGGAAGGAAGGCTGGATGGTATAGCCCATTTCTCATGGCATGTTACAATCCTGAAACAGAGGAGTACCAAAGCGTATGCCGTGTGATGTCTGGGTTCTCAGATGCCTTCTACATAGAGATGAAAGAATTCTTTTCTGAGGACAAAATATTGTCAAAAAAGCCACCATATTACCGAACAGCCGAGGTACCAGACAAGTGGTTCTGTCCACTGCTTGTTTGGGAAATAAGAGGTGCAGAATTTACAGTATCTCCAGTTCATGAAGCTGCCATTGGTCTGGTTCATCCGTCTCGCGGAATCTCAATCAGATTCCCTAGATTTGTCCGCAATGTGTTGGACAGGAACCCAGAAGAATGCAGCACAGCTGCTGATATAGCTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTTGCAACTGAAGATTAA 1632 0.4136 MKSTELRWRTTSLTTIEKWRRMLEIPAKDDGSCNLDSILQTGNGSTLRKKSIIVNLMCSCREKEIKFLVRTLARNLRTGAMIRTVLPALAQAVIMNSCPVLLQDGTAENLKEKLQGLSAEIMEAYNILPNLDFLIPSLMNKGTNFCASSLSMVPGIPIKPMLAKITNGIPQVLKLFQNKAFTCEYKYDGQRAQIHKLSDGSIRVFSRNGDETTSRFPDLIDVVKEFCKPASVTFILDAEIVGIDRKNGYRYMAFQELSSRGRGSKDASVSTDSIKVDICLFVFDIMFANGQQLLGFPLRERRKYLQDLFHDEKLGYFEYAKETTIEVDDASLTCEATVSKINSFLEGAIHSSCEGIMVKSLDVDAGYSPSKRTDTWLKVKRDYLDGLNDSLDLVPIGGWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDAFYIEMKEFFSEDKILSKKPPYYRTAEVPDKWFCPLLVWEIRGAEFTVSPVHEAAIGLVHPSRGISIRFPRFVRNVLDRNPEECSTAADIAEMFHSQTRKMDVATED 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3326 543 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 184 192 IPR016059 GO:0003909
Acco02g3326 543 ProSiteProfiles ATP-dependent DNA ligase family profile. 271 418 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Acco02g3326 543 Pfam ATP dependent DNA ligase C terminal region 406 510 IPR012309 GO:0003910|GO:0006281|GO:0006310
Acco02g3326 543 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 40 142 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco02g3326 543 Coils Coil 107 127 - -
Acco02g3326 543 CDD OBF_DNA_ligase_I 389 532 - -
Acco02g3326 543 Gene3D - 33 162 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco02g3326 543 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 40 535 - -
Acco02g3326 543 NCBIfam ATP-dependent DNA ligase 39 530 IPR000977 GO:0003910|GO:0005524|GO:0071897
Acco02g3326 543 FunFam DNA ligase 385 542 - -
Acco02g3326 543 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 122 381 - -
Acco02g3326 543 Pfam ATP dependent DNA ligase domain 160 380 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Acco02g3326 543 SUPERFAMILY Nucleic acid-binding proteins 389 533 IPR012340 -
Acco02g3326 543 Pfam DNA ligase N terminus 34 90 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Acco02g3326 543 CDD Adenylation_DNA_ligase_I_Euk 151 383 - -
Acco02g3326 543 Gene3D - 385 542 IPR012340 -
Acco02g3326 543 FunFam DNA ligase 189 320 - -
Acco02g3326 543 Gene3D DNA ligase/mRNA capping enzyme 189 320 - -
Acco02g3326 543 Gene3D - 170 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3326 Acco-ChrAcco02 45904391 45913817 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3326 40 533 Core DNA Replication Machinery Family AT1G08130 38.911 4.43e-127 389