Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3207 ATGGAAGAACAAGAAGATCAGCTTCAACAGCGACCTCGAGAATCCATATCATTTCCAATTCAAGGTATGGAGTCTGTGGTGGCAACAGTGAGTGGCTATCATGGAGCAGAGAGATTCAACCTTATCAAGTTGATTTCACATTCTGGTGCAAATTATGTTGGTGCAATGTCACGATCAATCACGCACCTGATTTGTTGGCGATTTGAAGGAAATAAATATAACCTTGCTCGGAAGTTCAGAACAGTTATAGTAAATCACCAGTGGATTGAAGACTGTTTAAAGCAAGGAAGGCGTGTTCCAGAGGAACCTTATAGATTGAAAAGTGGAGAAGAGATGGGGCCAATATTGCTGCAAGTTCCACTTATTGTTCAGGCGAGTGGCTCAACTAAGAATAAAATACTTAAACATGGATCAGATGACATTGTCTCCATTAGTCAAACAACTGACATCAGTTCTGGAGCTTCTGGAAATTCTGTCGAGCAAAATTTTTATTTAATGGACAAGGAGGAGCCAATAACTTTTTCTTCCAGACGATCAAAGACAGAAAAAAGAAAGTTCTCCTATAGCAATGGAGTGGCTACTTCTGCTGGTCCTTCTCGTCACAGAAGAAGGCTTGTAAAAAGGAATGTTCAAGAAGTTTCAGCTCCTTTACTTGATTTAAACTATGGGCACCTTAGCAGAATGGATAGATTAAATACTGATGCTGTAGCTTCTTCTAGCCTTTCTGGTTGTGTCTCAAGTGATACTATTTTAGAAAATAGAGAAGGATCAGATATTGACTCATACAACCAAAACATAGCTATCAATACAGCATCAAATGCCACTGGACAAATCAAAGATTCAAATAATTTAGCAAGCTCAAGAATTTCAACTCTATGCGTACAAGATGCCTTGCCTACTACAGAACAAATATCTATAGACGAGTGTTTTGAAAAGTCCGCTGATAGTATTCAGGATGGTCAAGCGGCTGACTTACCTACGTCGGCAGAGTTGTCATGTGTCATATGTTTGACAGAATTCAACTTAACGCGGGGGGTTTTGCCATGTGGACATAGGTTTTGTTATTCTTGTATCCAGAGCTGGGTTGATCACAGGACTGCAATGGGAAAAGTCTCAACGTGTCCCTTGTGCAAGTCAAGGTTTGACAATATCATTAAATATGAGGATATGGCTGTGGATCAGAAGATATATTCCCAAACAATCCCATGTGGCATTCCACTCTCAGATATCAATTTCCTTATGGATCGGGAACAACCAAACTATGGCTTTGAGGCTGGTGCTTGTGTTGTTTGCCGGGGACGAGAACCTGAAGATCTGCTCATGAGTTGCCATCTTTGCCATATTCGACAAATCCATTCCTATTGCCTGGACCCTCCTTTATTGCCATGGACATGCGATCACTGTAAGGATCTTCGGATGCTTTATCATAATCATTCACATTAG 1443 0.4061 MEEQEDQLQQRPRESISFPIQGMESVVATVSGYHGAERFNLIKLISHSGANYVGAMSRSITHLICWRFEGNKYNLARKFRTVIVNHQWIEDCLKQGRRVPEEPYRLKSGEEMGPILLQVPLIVQASGSTKNKILKHGSDDIVSISQTTDISSGASGNSVEQNFYLMDKEEPITFSSRRSKTEKRKFSYSNGVATSAGPSRHRRRLVKRNVQEVSAPLLDLNYGHLSRMDRLNTDAVASSSLSGCVSSDTILENREGSDIDSYNQNIAINTASNATGQIKDSNNLASSRISTLCVQDALPTTEQISIDECFEKSADSIQDGQAADLPTSAELSCVICLTEFNLTRGVLPCGHRFCYSCIQSWVDHRTAMGKVSTCPLCKSRFDNIIKYEDMAVDQKIYSQTIPCGIPLSDINFLMDREQPNYGFEAGACVVCRGREPEDLLMSCHLCHIRQIHSYCLDPPLLPWTCDHCKDLRMLYHNHSH 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3207 480 PANTHER F5A8.9 PROTEIN 154 477 - -
Acco02g3207 480 ProSitePatterns Zinc finger RING-type signature. 349 358 IPR017907 -
Acco02g3207 480 SMART ring_2 333 377 IPR001841 -
Acco02g3207 480 SMART BRCT_7 20 96 IPR001357 -
Acco02g3207 480 ProSiteProfiles BRCT domain profile. 15 106 IPR001357 -
Acco02g3207 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 402 IPR013083 -
Acco02g3207 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 415 479 IPR013083 -
Acco02g3207 480 Pfam Ring finger domain 332 378 IPR001841 -
Acco02g3207 480 SUPERFAMILY BRCT domain 20 107 IPR036420 -
Acco02g3207 480 ProSiteProfiles Zinc finger RING-type profile. 333 378 IPR001841 -
Acco02g3207 480 Pfam twin BRCT domain 26 88 IPR001357 -
Acco02g3207 480 SUPERFAMILY FYVE/PHD zinc finger 424 470 IPR011011 -
Acco02g3207 480 Gene3D BRCT domain 20 111 IPR036420 -
Acco02g3207 480 SUPERFAMILY RING/U-box 328 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3207 Acco-ChrAcco02 43941468 43946134 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3207 60 112 Core DNA Replication Machinery Family AT4G02110 50.000 1.53e-11 65.1