Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3180 ATGGTTGATGGAACTGATTTAGTTGCCTTTGGGGTCTCTGCTGGTCTGGCCTTTGCAATTTTGATAGCTGGTCTCATATTTTTTGTCATAAAGTGGCATAAGAAGCGCACTCATCTTAGACGTTGTGCAAATGAGCATAGTGCAACAACACTTCCAATACGCACAAATGGATTAGAAACAAGCACTGAATTTAGTGCTTCTCTTACAAGCTCCATAGCTGCTCCAATGTCAGAAAATCTTCATAAAGATTCCCATTTCTCTTGGTGGAAACGTCCGAAGAAAGATCAATTTACATCCTCATCAGGCAATCTTAGATACTCATTCAAAGATATTCAGAAGGCAACACAAAATTTCACAACTATCTTGGGACAAGGATCATTTGGAACAGTTCATAAAGCAACAATGCCTACCGGTGAGGTGGTAGCTGTGAAGGTGCTCAGTTCTGATTCCAAACAAGGGGAGAAAGAATTCCAAACAGAGGTACTTTTGCTCGGAAGACTGCATCATCGGAATCTTGTAAATTTGTTAGGATATTGTGTAGATAAAGGACAACGTATTTTGATTTATGAGTTTATGAGCAATGGAAGTCTAGAAAGGCTTATACATGGTGAAGAAAAGGTGTTAAGTTGGGATGAAAGGCTGCAAATTTCTGTTGACATCTCACATGGAATTGAATACCTTCATGAAGGAGCAGTCCCGCCCGTCATACACCGTGATTTGAAATCTGCCAATATATTGTTAGATCACTCAATGCGAGCTAAGGTGGCTGACTTTGGGCTCTCAAAGGAGGAAATCTTTGATGAGCGAAAATCTGGCTTGAAAGGCACATATGGCTACATGGACCCATCATACATCTCCACTTCCAAGTTCACAATGAAAAGTGACATTTACAGTTTTGGCATCATCATTTTCGAGCTCATCACTGCCATTCACCCCCAACAGAATTTGATGGAATACGTTAACCTTGCTGCAATGGATCATGATGGTGTAGATGGAATACTTGACAAGAGACTGGTGGGAAAATGTAACATTGAAGAAGTGAGGAAGCTTGCTAAGATTGGGCACAAGTGCTTACACAAATCACCCAAGAAACGTCCTTCAATTGGTGAGGTTTCACAGGCTATATCCGGCATCAGACAGAGACGCCTTTTAAAAGAAAAGACCTTGTCTTTTGCTGGCTCTAGCTTCTCCAGAGCCTTCAGCCGAATTGATGATCAACAAGTTGAGTTAAGTAGGATGGCCACCATGGCCCACTAG 1257 0.4153 MVDGTDLVAFGVSAGLAFAILIAGLIFFVIKWHKKRTHLRRCANEHSATTLPIRTNGLETSTEFSASLTSSIAAPMSENLHKDSHFSWWKRPKKDQFTSSSGNLRYSFKDIQKATQNFTTILGQGSFGTVHKATMPTGEVVAVKVLSSDSKQGEKEFQTEVLLLGRLHHRNLVNLLGYCVDKGQRILIYEFMSNGSLERLIHGEEKVLSWDERLQISVDISHGIEYLHEGAVPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDERKSGLKGTYGYMDPSYISTSKFTMKSDIYSFGIIIFELITAIHPQQNLMEYVNLAAMDHDGVDGILDKRLVGKCNIEEVRKLAKIGHKCLHKSPKKRPSIGEVSQAISGIRQRRLLKEKTLSFAGSSFSRAFSRIDDQQVELSRMATMAH 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3180 418 FunFam serine/threonine-protein kinase PBS1-like 88 191 - -
Acco02g3180 418 SUPERFAMILY Protein kinase-like (PK-like) 90 373 IPR011009 -
Acco02g3180 418 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 381 - -
Acco02g3180 418 SMART serkin_6 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g3180 418 Gene3D Phosphorylase Kinase; domain 1 82 191 - -
Acco02g3180 418 PIRSF TyrPK_CSF1-R 9 38 - -
Acco02g3180 418 PIRSF TyrPK_CSF1-R 192 415 - -
Acco02g3180 418 PIRSF TyrPK_CSF1-R 113 206 - -
Acco02g3180 418 ProSitePatterns Protein kinases ATP-binding region signature. 122 144 IPR017441 GO:0005524
Acco02g3180 418 CDD STKc_IRAK 122 378 - -
Acco02g3180 418 ProSiteProfiles Protein kinase domain profile. 116 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g3180 418 Pfam Protein tyrosine and serine/threonine kinase 118 373 IPR001245 GO:0004672|GO:0006468
Acco02g3180 418 Gene3D Transferase(Phosphotransferase) domain 1 192 393 - -
Acco02g3180 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Acco02g3180 418 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 192 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3180 Acco-ChrAcco02 43432187 43435826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3180 107 382 Receptor kinase-like Gene Family AT1G67720 43.599 1.04e-69 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Acco02g3180 PK_Tyr_Ser-Thr 3.7e-50 CL0016