Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3178 ATGGCTCGGTCTGCGAGGGGCCAGCAACAAGAATTGGAAGACGACGACGAAGATCACCTGACTGGAAATGGCTCTTCTTCGTCCAAAGTGAAGGTGGATGAAGCGACTAGAGAGCATCGGGTTAACGCGCATCGTTCGAAGCATTCAGAAACTGAGCAGCGTAGAAGGAGCAAGATAAATGAAAGATTTCAGATTCTGAGAGATCTCATCCCTCAAAATGATCAAAAAAGGGATAAGGCTTCTTTCTTGTTGGAGGTTATCGAGTATATTCAATTTTTACAGGAGAAAATACAAATGCAGGAGCAATCTTACCAAGGGTGGAATCAAGAGCCAATGAAATTAATTCCTTGGAGAAATCATCGTGAACCTACAGATAATGTCATATCACAAGCTATACAAAATGGTTCTGGTCATGAGAACAACGATGTTATCTCTCCGTCACTGCCCTTAAATGCACAGAATACAATGGAATCTGACTTGTCATCCACAATCATTCATAAGGCTGCCCCCCCTGCTTTATCTCCTGACGCAGTTCCATTGGGTATGCAAATGCGATTGGACATGTTTGATCTGACTGCAAACAGTGGCATTCCAGCCCAACATTTACATGAAGCAGTATCTAACACTGAGAACATGCTTTCCCATGGTCAGCCTCAGTTGTGTGTTGGCGAACCTAATGAGTGTGCATATGATTTTCCAAATAATACATTGAAGGAACAGGACGAGTTGAGATATGAAAGTGAGTCAGTTAGCATCTCAAGAGCCTATTCTCAGGGCATATTGGACACTTTTGTGCAATCATTGCGGTCTTCAGGTGTGGGTTTATCTGAGGCCAACGTTTCAGTACAAATTGATGTAGGAAGACAATCAATTGCCTCCACATCCTGCTCAAAGGATCATGAGAACCAATTTGTGGCCACCCCATCAATGCCATGTTCAGGAGTTGATTACTACCGTGAAGATTCTGAACAAGCTCTTAAGAGGCTCAGAACAGAAGAGAGTTAG 1005 0.4318 MARSARGQQQELEDDDEDHLTGNGSSSSKVKVDEATREHRVNAHRSKHSETEQRRRSKINERFQILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKIQMQEQSYQGWNQEPMKLIPWRNHREPTDNVISQAIQNGSGHENNDVISPSLPLNAQNTMESDLSSTIIHKAAPPALSPDAVPLGMQMRLDMFDLTANSGIPAQHLHEAVSNTENMLSHGQPQLCVGEPNECAYDFPNNTLKEQDELRYESESVSISRAYSQGILDTFVQSLRSSGVGLSEANVSVQIDVGRQSIASTSCSKDHENQFVATPSMPCSGVDYYREDSEQALKRLRTEES 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3178 334 FunFam BHLH domain class transcription factor 41 113 - -
Acco02g3178 334 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Acco02g3178 334 MobiDBLite consensus disorder prediction 31 56 - -
Acco02g3178 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 93 IPR011598 GO:0046983
Acco02g3178 334 Coils Coil 90 110 - -
Acco02g3178 334 SMART finulus 49 99 IPR011598 GO:0046983
Acco02g3178 334 Gene3D - 41 114 IPR036638 GO:0046983
Acco02g3178 334 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 4 332 IPR044295 GO:0003700|GO:0006351|GO:0046983
Acco02g3178 334 CDD bHLH_AtBIM_like 42 118 - -
Acco02g3178 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 120 IPR036638 GO:0046983
Acco02g3178 334 MobiDBLite consensus disorder prediction 1 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3178 Acco-ChrAcco02 43389342 43394059 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3178 3 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 38.742 7.43e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco02g3178 HLH 1.5e-15 No_clan