Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g3162 ATGGGTTCTGTTTGTGGCTGTTTGAGTGTTGAGAATCTTGAAGATTATGTCAATCCAAATAGTTCTGTATATAGAAATTGCATGTGCTTCAGTTGCTTCATACATAACTTTTTGAATGCGTATACTACAATATTTCGTAGGCGCGAAGTGCATTCTATTTCTTCATCTATTCAGGGGGCAGCATCTATGACTTCTACGGCATCACTAGATAATTCATTATCAGACATGTACCGTGCGCCTCCACGGCCCTTGCCATATGATGCAGACTCTAGGCATTTTCTCTCACAACGTGATGGACTAATTTCAAGACGGGAGAAGGGTTCAAGCCATTCAAATGAGGAATCACAACCTCTACGAAGTGATCCAGATGTGGATTCAGAATCTTTGAATATGGGAGACAAATGGAATGATTGTACCTGTGAAAATGGATCAAAGGAGTACCTTACTAAGTCCTCACTAAGACTCTCATCAGCAAAATATACAACTGGAGCTGGGGCGGTCTATGCATCATTAGAAGATGAGGATGTTTGCCCAACATGCCTTGAAGATTATACTCGAGAGAATCCAAAGATAATGACAAAATGCTCCCACCATTTTCATCTTGGCTGCATCTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTGTGTGGGAAGGAGATGGAATTTGATGAAACGCCATAA 684 0.4123 MGSVCGCLSVENLEDYVNPNSSVYRNCMCFSCFIHNFLNAYTTIFRRREVHSISSSIQGAASMTSTASLDNSLSDMYRAPPRPLPYDADSRHFLSQRDGLISRREKGSSHSNEESQPLRSDPDVDSESLNMGDKWNDCTCENGSKEYLTKSSLRLSSAKYTTGAGAVYASLEDEDVCPTCLEDYTRENPKIMTKCSHHFHLGCIYEWMERSENCPVCGKEMEFDETP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g3162 227 CDD RING-H2_AIRP1-like 173 221 - -
Acco02g3162 227 SUPERFAMILY RING/U-box 171 223 - -
Acco02g3162 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 55 225 - -
Acco02g3162 227 SMART ring_2 177 217 IPR001841 -
Acco02g3162 227 MobiDBLite consensus disorder prediction 102 129 - -
Acco02g3162 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Acco02g3162 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Acco02g3162 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 224 IPR013083 -
Acco02g3162 227 Pfam RING-H2 zinc finger domain 174 217 IPR024766 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g3162 Acco-ChrAcco02 43097533 43103553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g3162 1 227 C3H Transcription Factor Family AT5G15790 57.759 2.12e-91 266